Variant report

Variant	rs45448291
Chromosome Location	chr10:97037254-97037255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97030116..97038568-chr10:97046190..97052064,12	MCF-7	breast:
2	chr10:97031784..97034923-chr10:97035763..97037626,3	MCF-7	breast:
3	chr10:97036635..97040671-chr10:97047353..97052076,8	K562	blood:
4	chr10:97035976..97040217-chr10:97047732..97050873,5	K562	blood:
5	chr10:97036138..97037977-chr10:97055615..97058500,2	K562	blood:
6	chr10:97036752..97039055-chr10:97044973..97046956,2	MCF-7	breast:
7	chr10:97036003..97038963-chr10:97049234..97050879,2	MCF-7	breast:
8	chr10:97035457..97038031-chr10:97038055..97040397,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12098304	0.83[AMR][1000 genomes]
rs45620737	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61478963	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
2	chr10:97028600-97038200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:97029000-97039200	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:97030600-97037800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:97031000-97038200	Weak transcription	Fetal Stomach	stomach
6	chr10:97031600-97046600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr10:97032400-97040800	Enhancers	Stomach Mucosa	stomach
8	chr10:97032600-97041000	Enhancers	Fetal Intestine Large	intestine
9	chr10:97032600-97043600	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr10:97032800-97037600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:97032800-97039200	Enhancers	Duodenum Mucosa	Duodenum
12	chr10:97032800-97042800	Enhancers	Small Intestine	intestine
13	chr10:97033000-97038600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:97033000-97039800	Enhancers	K562	blood
15	chr10:97033400-97037800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr10:97033400-97039000	Enhancers	Left Ventricle	heart
17	chr10:97033400-97039400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr10:97033600-97037800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:97033600-97037800	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:97033600-97040000	Enhancers	Adipose Nuclei	Adipose
21	chr10:97033800-97037600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:97033800-97038000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:97033800-97039800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:97033800-97041600	Enhancers	NHLF	lung
25	chr10:97033800-97042400	Enhancers	Osteobl	bone
26	chr10:97034000-97037600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:97034000-97037600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:97034000-97040600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:97034000-97042000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:97034000-97042400	Enhancers	NHDF-Ad	bronchial
31	chr10:97034000-97045000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:97034000-97046400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr10:97034200-97038200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr10:97035400-97037800	Enhancers	HSMM	muscle
35	chr10:97035600-97037800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:97035600-97041200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:97035600-97041200	Enhancers	HepG2	liver
38	chr10:97035800-97037600	Genic enhancers	GM12878-XiMat	blood
39	chr10:97035800-97038000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:97035800-97039400	Enhancers	Colonic Mucosa	Colon
41	chr10:97036000-97038200	Enhancers	Esophagus	oesophagus
42	chr10:97036000-97038600	Enhancers	Right Atrium	heart
43	chr10:97036000-97041600	Enhancers	Primary B cells from peripheral blood	blood
44	chr10:97036200-97038000	Weak transcription	Pancreas	Pancrea
45	chr10:97036400-97037400	Weak transcription	HSMMtube	muscle
46	chr10:97036400-97037800	Weak transcription	Liver	Liver
47	chr10:97036400-97038000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:97036400-97038200	Enhancers	Stomach Smooth Muscle	stomach
49	chr10:97036400-97039200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:97036400-97041600	Enhancers	HMEC	breast

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