Variant report

Variant	rs4545126
Chromosome Location	chr8:126525035-126525036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:126524515..126526487-chr8:126552977..126554978,2	MCF-7	breast:
2	chr8:126519998..126523591-chr8:126523937..126526687,3	MCF-7	breast:
3	chr8:126511075..126514085-chr8:126521842..126525722,3	MCF-7	breast:
4	chr8:126523824..126525644-chr8:126527668..126529840,2	MCF-7	breast:
5	chr8:126182429..126184249-chr8:126522972..126525365,2	K562	blood:
6	chr8:126462918..126464669-chr8:126522806..126525231,2	MCF-7	breast:
7	chr8:126519872..126521908-chr8:126523725..126526407,2	K562	blood:
8	chr8:126517122..126519664-chr8:126522287..126525132,2	MCF-7	breast:
9	chr8:126524197..126526991-chr8:126702138..126703710,2	K562	blood:
10	chr8:126440271..126444147-chr8:126523927..126527382,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12114418	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13251094	0.92[LWK][hapmap];0.84[MKK][hapmap];0.93[YRI][hapmap]
rs62523863	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6470362	0.81[CEU][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs6470363	0.89[ASN][1000 genomes]
rs6470364	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126517200-126529000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:126517600-126528000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:126518000-126534400	Weak transcription	Right Atrium	heart
4	chr8:126518600-126528800	Weak transcription	Right Ventricle	heart
5	chr8:126518600-126529400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr8:126521800-126526600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr8:126522200-126525200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr8:126522200-126525200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr8:126522400-126525200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:126522400-126526800	Enhancers	Spleen	Spleen
11	chr8:126522600-126528800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:126522800-126525200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:126522800-126525400	Weak transcription	Lung	lung
14	chr8:126523200-126526200	Enhancers	Placenta	Placenta
15	chr8:126523400-126525200	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr8:126523600-126525600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:126524000-126526000	Enhancers	Brain Substantia Nigra	brain
18	chr8:126524000-126526200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr8:126524200-126525200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:126524200-126526600	Enhancers	Liver	Liver
21	chr8:126524200-126527000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:126524200-126527000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:126524200-126527000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr8:126524200-126528600	Enhancers	HMEC	breast
25	chr8:126524400-126525200	Enhancers	GM12878-XiMat	blood
26	chr8:126524400-126525600	Weak transcription	Brain Hippocampus Middle	brain
27	chr8:126524400-126526200	Enhancers	Colon Smooth Muscle	Colon
28	chr8:126524400-126527000	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr8:126524400-126528200	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr8:126524400-126528800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr8:126524400-126528800	Enhancers	NHEK	skin
32	chr8:126524600-126526000	Enhancers	Fetal Lung	lung
33	chr8:126524600-126526200	Enhancers	Fetal Intestine Small	intestine
34	chr8:126524600-126526200	Flanking Active TSS	HepG2	liver
35	chr8:126524600-126526400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr8:126524600-126526400	Enhancers	Fetal Muscle Trunk	muscle
37	chr8:126524600-126527000	Enhancers	Duodenum Mucosa	Duodenum
38	chr8:126524600-126527000	Enhancers	Fetal Intestine Large	intestine
39	chr8:126524600-126527000	Enhancers	Placenta Amnion	Placenta Amnion
40	chr8:126524600-126527200	Enhancers	Primary hematopoietic stem cells	blood
41	chr8:126524600-126527200	Enhancers	Small Intestine	intestine
42	chr8:126524600-126527200	Enhancers	NHLF	lung
43	chr8:126524600-126527400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr8:126524600-126527400	Enhancers	NH-A	brain
45	chr8:126524600-126528000	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr8:126524600-126528200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr8:126524600-126528200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr8:126524600-126529400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr8:126524800-126525600	Enhancers	Primary B cells from cord blood	blood
50	chr8:126524800-126525600	Enhancers	Monocytes-CD14+_RO01746	blood

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