Variant report

Variant	rs454526
Chromosome Location	chr7:52030332-52030333
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs364752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs392252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs400204	0.83[EUR][1000 genomes]
rs410473	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs424283	0.83[EUR][1000 genomes]
rs426522	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs428360	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs616199	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs664926	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487105	chr7:51737945-52166865	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3487106	chr7:51737945-52166865	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1021159	chr7:51991383-52596649	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv981828	chr7:52024255-52033045	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	nsv971194	chr7:52024255-52040459	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52030000-52030600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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