The 2.0 version of rSNPBase

Variant report

Variant rs45460394
Chromosome Location chr2:113946011-113946012
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:113923000-113951800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr2:113923000-113956000 Weak transcription HMEC breast
3 chr2:113934200-113949000 Genic enhancers Primary B cells from peripheral blood blood
4 chr2:113934200-113956200 Weak transcription Rectal Smooth Muscle rectum
5 chr2:113934400-113948600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr2:113934600-113946400 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
7 chr2:113939400-113946400 Genic enhancers Primary T cells fromperipheralblood blood
8 chr2:113939400-113946800 Genic enhancers Primary T regulatory cells fromperipheralblood blood
9 chr2:113939400-113948400 Genic enhancers Primary T helper cells fromperipheralblood blood
10 chr2:113939400-113949000 Genic enhancers Primary T helper naive cells fromperipheralblood blood
11 chr2:113939400-113956000 Weak transcription Brain Cingulate Gyrus brain
12 chr2:113939400-113956400 Weak transcription Small Intestine intestine
13 chr2:113939600-113947800 Genic enhancers Primary T helper cells PMA-I stimulated --
14 chr2:113939600-113953800 Weak transcription Placenta Amnion Placenta Amnion
15 chr2:113939600-113955400 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr2:113939600-113956200 Weak transcription Fetal Lung lung
17 chr2:113939800-113946200 Strong transcription Thymus Thymus
18 chr2:113940000-113946800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr2:113940000-113961000 Strong transcription Primary hematopoietic stem cells short term culture blood
20 chr2:113940400-113950000 Weak transcription Fetal Adrenal Gland Adrenal Gland
21 chr2:113941000-113950000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr2:113941200-113949800 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr2:113941400-113950000 Weak transcription Esophagus oesophagus
24 chr2:113941800-113949000 Genic enhancers Primary monocytes fromperipheralblood blood
25 chr2:113941800-113950000 Weak transcription NHEK skin
26 chr2:113942000-113948800 Genic enhancers Primary T cells from cord blood blood
27 chr2:113942000-113950400 Weak transcription Fetal Intestine Large intestine
28 chr2:113942400-113950200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr2:113942800-113956600 Strong transcription Fetal Thymus thymus
30 chr2:113942800-113961000 Strong transcription Dnd41 blood
31 chr2:113943000-113946600 Strong transcription Duodenum Mucosa Duodenum
32 chr2:113943000-113956200 Weak transcription Brain Substantia Nigra brain
33 chr2:113943600-113950000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
34 chr2:113943600-113956200 Weak transcription Adipose Nuclei Adipose
35 chr2:113943800-113948600 Weak transcription Colonic Mucosa Colon
36 chr2:113943800-113949600 Weak transcription Gastric stomach
37 chr2:113943800-113950000 Weak transcription Lung lung
38 chr2:113943800-113955200 Weak transcription Stomach Mucosa stomach
39 chr2:113943800-113956000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr2:113944200-113948400 Weak transcription Liver Liver
41 chr2:113944400-113950000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr2:113944400-113950000 Weak transcription Placenta Placenta
43 chr2:113944400-113950000 Weak transcription Pancreas Pancrea
44 chr2:113944600-113950000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr2:113945000-113948600 Weak transcription Fetal Intestine Small intestine
46 chr2:113945200-113948600 Weak transcription Spleen Spleen
47 chr2:113945200-113949800 Weak transcription Fetal Stomach stomach
48 chr2:113945400-113946600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
49 chr2:113945400-113947800 Weak transcription Primary T helper naive cells from peripheral blood blood
50 chr2:113945400-113948600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015