Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr7:99424524-99426205	MCF-7	breast:	n/a	chr7:99425893-99425904 chr7:99425892-99425900
2	CEBPB	chr7:99424795-99425601	HepG2	liver:	n/a	chr7:99424982-99424993
3	TEAD4	chr7:99424664-99426074	HepG2	liver:	n/a	n/a
4	NFIC	chr7:99424463-99425675	HepG2	liver:	n/a	n/a
5	HEY1	chr7:99425401-99425879	HepG2	liver:	n/a	n/a
6	FOXA2	chr7:99424696-99426131	HepG2	liver:	n/a	n/a
7	ARID3A	chr7:99424875-99425944	HepG2	liver:	n/a	n/a
8	FOXA1	chr7:99424643-99426060	HepG2	liver:	n/a	n/a
9	FOXA1	chr7:99424643-99426058	HepG2	liver:	n/a	n/a
10	STAT3	chr7:99424755-99425516	MCF10A-Er-Src	breast:	n/a	chr7:99424928-99424951
11	MYBL2	chr7:99424540-99425971	HepG2	liver:	n/a	n/a
12	SP1	chr7:99424606-99425671	HepG2	liver:	n/a	n/a
13	RFX5	chr7:99424804-99425724	HepG2	liver:	n/a	chr7:99425342-99425357
14	FOXA1	chr7:99424658-99426061	HepG2	liver:	n/a	n/a
15	GATA3	chr7:99424604-99426143	MCF-7	breast:	n/a	chr7:99425893-99425904 chr7:99425892-99425900
16	TCF12	chr7:99424633-99425564	MCF-7	breast:	n/a	chr7:99425435-99425444
17	EP300	chr7:99424635-99425513	HepG2	liver:	n/a	n/a
18	FOXA1	chr7:99424756-99426046	HepG2	liver:	n/a	n/a
19	SIN3AK20	chr7:99424534-99426163	MCF-7	breast:	n/a	n/a
20	POLR2A	chr7:99423282-99425951	MCF10A-Er-Src	breast:	n/a	n/a
21	NR2F2	chr7:99424621-99425916	HepG2	liver:	n/a	n/a
22	TCF7L2	chr7:99424765-99425488	HepG2	liver:	n/a	n/a
23	POLR2A	chr7:99425468-99425939	HepG2	liver:	n/a	n/a
24	TBP	chr7:99425439-99425802	HepG2	liver:	n/a	n/a
25	FOXA2	chr7:99424729-99426033	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99213826..99215884-chr7:99424650..99426774,2	MCF-7	breast:

Variant related genes	Relation type
CYP3A43	TF binding region
ENSG00000197037	Chromatin interaction

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28988600	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3383358	chr7:99425293-99425703	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99419400-99432200	Enhancers	Fetal Intestine Small	intestine
2	chr7:99419600-99432000	Enhancers	Fetal Intestine Large	intestine
3	chr7:99421000-99425800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:99421000-99426400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:99422800-99437400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:99423800-99426600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:99424000-99426600	Weak transcription	Adipose Nuclei	Adipose
8	chr7:99424200-99430400	Enhancers	K562	blood
9	chr7:99424400-99426600	Enhancers	Stomach Mucosa	stomach
10	chr7:99424600-99426000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:99424600-99429200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:99424800-99426800	Weak transcription	Pancreas	Pancrea
13	chr7:99425200-99426000	Flanking Active TSS	HepG2	liver
14	chr7:99425400-99425800	Flanking Active TSS	Liver	Liver
15	chr7:99425400-99426600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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