Variant report

Variant	rs4549318
Chromosome Location	chr3:160531629-160531630
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1455870	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455871	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831442	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16831457	0.91[EUR][1000 genomes]
rs16831471	0.97[EUR][1000 genomes]
rs16831473	0.97[EUR][1000 genomes]
rs16831516	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831520	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17236620	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17236641	0.88[EUR][1000 genomes]
rs17236648	0.97[EUR][1000 genomes]
rs17236655	0.97[EUR][1000 genomes]
rs17236662	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17826352	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17826358	0.91[EUR][1000 genomes]
rs17826364	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17826370	0.97[EUR][1000 genomes]
rs17826376	0.97[EUR][1000 genomes]
rs2068817	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34035435	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3907061	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4627794	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55891037	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55905728	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923270	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55997050	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56083575	0.97[EUR][1000 genomes]
rs56141155	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56157815	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56180903	0.97[EUR][1000 genomes]
rs56331465	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57828617	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58891820	0.97[EUR][1000 genomes]
rs6771910	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779461	0.97[EUR][1000 genomes]
rs73877952	0.97[EUR][1000 genomes]
rs73877966	0.97[EUR][1000 genomes]
rs7618082	0.97[EUR][1000 genomes]
rs7618596	0.97[EUR][1000 genomes]
rs7629154	0.97[EUR][1000 genomes]
rs7633401	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160523000-160532800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:160528200-160537600	Weak transcription	Hela-S3	cervix
3	chr3:160528400-160533000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:160529000-160534400	Weak transcription	Aorta	Aorta
5	chr3:160529200-160533800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:160529800-160533000	Weak transcription	Brain Substantia Nigra	brain
7	chr3:160530600-160533000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:160530600-160533400	Weak transcription	Brain Anterior Caudate	brain
9	chr3:160530600-160533600	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:160530600-160533800	Weak transcription	Brain Germinal Matrix	brain
11	chr3:160530600-160536000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:160530600-160537800	Weak transcription	Gastric	stomach
13	chr3:160530800-160531800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:160530800-160540800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:160530800-160543200	Weak transcription	Psoas Muscle	Psoas

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