Variant report

Variant	rs4549455
Chromosome Location	chr4:55870542-55870543
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4529118	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4864943	0.80[AMR][1000 genomes]
rs6820472	0.90[AMR][1000 genomes]
rs6823976	0.90[AMR][1000 genomes]
rs6843637	0.90[AMR][1000 genomes]
rs7659597	0.90[AMR][1000 genomes]
rs7697459	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55865800-55870600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:55865800-55870600	Weak transcription	Adipose Nuclei	Adipose
3	chr4:55870000-55872800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:55870200-55871200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:55870400-55871200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr4:55870400-55871200	Enhancers	Right Atrium	heart
7	chr4:55870400-55871400	Enhancers	Fetal Muscle Leg	muscle
8	chr4:55870400-55871400	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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