Variant report

Variant	rs45501695
Chromosome Location	chr2:171714079-171714080
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10208705	0.82[EUR][1000 genomes]
rs10930443	1.00[EUR][1000 genomes]
rs10930444	0.82[EUR][1000 genomes]
rs10930445	0.82[EUR][1000 genomes]
rs11895068	0.82[EUR][1000 genomes]
rs12472230	1.00[EUR][1000 genomes]
rs12614879	0.90[EUR][1000 genomes]
rs12620730	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13014614	0.87[AFR][1000 genomes]
rs1894915	0.82[EUR][1000 genomes]
rs1894921	0.82[EUR][1000 genomes]
rs4667664	0.82[EUR][1000 genomes]
rs4667665	0.82[EUR][1000 genomes]
rs4668337	0.82[EUR][1000 genomes]
rs4668338	0.82[EUR][1000 genomes]
rs4668339	0.82[EUR][1000 genomes]
rs6433258	1.00[EUR][1000 genomes]
rs6433263	0.82[EUR][1000 genomes]
rs6713482	0.82[EUR][1000 genomes]
rs6734495	0.82[EUR][1000 genomes]
rs7564818	0.82[EUR][1000 genomes]
rs7575296	0.82[EUR][1000 genomes]
rs7576508	0.82[EUR][1000 genomes]
rs7578938	0.82[EUR][1000 genomes]
rs7580088	0.82[EUR][1000 genomes]
rs7602737	0.82[EUR][1000 genomes]
rs7603048	0.82[EUR][1000 genomes]
rs7606814	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508179	chr2:171708404-171736003	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171688800-171719000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:171690000-171715000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:171697200-171718400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:171699000-171730000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:171703000-171718600	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:171704000-171717000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:171705200-171725200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:171710000-171718200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:171710400-171725600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:171712600-171714800	Strong transcription	Brain Anterior Caudate	brain
11	chr2:171713800-171716200	Weak transcription	Aorta	Aorta
12	chr2:171713800-171717200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:171713800-171724000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr2:171714000-171719400	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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