Variant report
Variant | rs4550915 |
---|---|
Chromosome Location | chr4:28258833-28258834 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:28250932..28252877-chr4:28258157..28260159,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10011359 | 0.85[AMR][1000 genomes] |
rs10021592 | 0.85[AMR][1000 genomes] |
rs10433806 | 0.84[AMR][1000 genomes] |
rs10433807 | 0.85[AMR][1000 genomes] |
rs10433842 | 0.85[AMR][1000 genomes] |
rs12644493 | 0.85[AMR][1000 genomes] |
rs12646312 | 0.82[AMR][1000 genomes] |
rs1353650 | 0.83[AMR][1000 genomes] |
rs1391219 | 0.87[AMR][1000 genomes] |
rs1497699 | 0.85[AMR][1000 genomes] |
rs1497701 | 0.83[AMR][1000 genomes] |
rs1497712 | 0.82[AMR][1000 genomes] |
rs1497713 | 0.82[AMR][1000 genomes] |
rs1497716 | 0.85[AMR][1000 genomes] |
rs1497717 | 0.85[AMR][1000 genomes] |
rs16880440 | 0.83[AMR][1000 genomes] |
rs17619774 | 0.83[AMR][1000 genomes] |
rs17619834 | 0.81[AMR][1000 genomes] |
rs17681493 | 0.83[AMR][1000 genomes] |
rs17681723 | 0.85[AMR][1000 genomes] |
rs1948610 | 0.83[AMR][1000 genomes] |
rs2036181 | 0.89[AMR][1000 genomes] |
rs2036183 | 0.89[AMR][1000 genomes] |
rs2309718 | 0.85[AMR][1000 genomes] |
rs2309722 | 0.89[AMR][1000 genomes] |
rs28377207 | 0.83[AMR][1000 genomes] |
rs28413790 | 0.83[AMR][1000 genomes] |
rs28467171 | 0.85[AMR][1000 genomes] |
rs28491807 | 0.85[AMR][1000 genomes] |
rs28497932 | 0.83[AMR][1000 genomes] |
rs28513496 | 0.83[AMR][1000 genomes] |
rs28683509 | 0.83[AMR][1000 genomes] |
rs2871315 | 0.93[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs28859954 | 0.85[AMR][1000 genomes] |
rs28889732 | 0.85[AMR][1000 genomes] |
rs35621260 | 0.88[AMR][1000 genomes] |
rs4364251 | 0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4411974 | 0.82[AMR][1000 genomes] |
rs4484281 | 0.87[AMR][1000 genomes] |
rs4692049 | 0.87[AMR][1000 genomes] |
rs4692050 | 0.85[AMR][1000 genomes] |
rs4692301 | 0.85[AMR][1000 genomes] |
rs4692306 | 0.87[AMR][1000 genomes] |
rs4692307 | 0.88[AMR][1000 genomes] |
rs57209669 | 0.89[AMR][1000 genomes] |
rs58122848 | 0.89[AMR][1000 genomes] |
rs58189113 | 0.87[AMR][1000 genomes] |
rs60385254 | 0.87[AMR][1000 genomes] |
rs60552601 | 0.87[AMR][1000 genomes] |
rs66505524 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs66516862 | 0.85[AMR][1000 genomes] |
rs66538132 | 0.87[AMR][1000 genomes] |
rs66761305 | 0.82[AMR][1000 genomes] |
rs66953666 | 0.87[AMR][1000 genomes] |
rs67049612 | 0.80[AMR][1000 genomes] |
rs67357525 | 0.82[AMR][1000 genomes] |
rs67568650 | 0.82[AMR][1000 genomes] |
rs67575578 | 0.89[AMR][1000 genomes] |
rs67596549 | 0.89[AMR][1000 genomes] |
rs67721098 | 0.87[AMR][1000 genomes] |
rs67773111 | 0.87[AMR][1000 genomes] |
rs67985929 | 0.84[AMR][1000 genomes] |
rs68027003 | 0.87[AMR][1000 genomes] |
rs68152757 | 0.87[AMR][1000 genomes] |
rs6815427 | 0.83[AMR][1000 genomes] |
rs68193608 | 0.85[AMR][1000 genomes] |
rs6830652 | 0.82[AMR][1000 genomes] |
rs6832858 | 0.82[AMR][1000 genomes] |
rs6833026 | 0.83[AMR][1000 genomes] |
rs6839474 | 0.82[AMR][1000 genomes] |
rs73221862 | 0.85[AMR][1000 genomes] |
rs73221864 | 0.87[AMR][1000 genomes] |
rs73221867 | 0.87[AMR][1000 genomes] |
rs73221870 | 0.87[AMR][1000 genomes] |
rs73221871 | 0.87[AMR][1000 genomes] |
rs7436389 | 0.87[AMR][1000 genomes] |
rs7698910 | 0.83[AMR][1000 genomes] |
rs924236 | 0.87[AMR][1000 genomes] |
rs924237 | 0.83[AMR][1000 genomes] |
rs924238 | 0.87[AMR][1000 genomes] |
rs924239 | 0.87[AMR][1000 genomes] |
rs924240 | 0.87[AMR][1000 genomes] |
rs996281 | 0.87[AMR][1000 genomes] |
rs996282 | 0.84[AMR][1000 genomes] |
rs9999649 | 0.85[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1005382 | chr4:28157180-28403800 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv878775 | chr4:28163856-28473048 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv1000514 | chr4:28192982-28445194 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | nsv878776 | chr4:28208093-28267024 | Active TSS Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv878777 | chr4:28208093-28343903 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv878778 | chr4:28237783-28343903 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv1012210 | chr4:28246489-28419673 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:28235000-28279200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr4:28256000-28259800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |