Variant report

Variant	rs4551739
Chromosome Location	chr11:19383628-19383629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10833097	0.84[JPT][hapmap]
rs4757773	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19371400-19386000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:19381400-19392200	Weak transcription	Aorta	Aorta
3	chr11:19381600-19385200	Weak transcription	NHDF-Ad	bronchial
4	chr11:19381600-19385400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:19381600-19385400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:19381600-19386800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:19381600-19386800	Weak transcription	Osteobl	bone
8	chr11:19381600-19387000	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:19381600-19387000	Weak transcription	NHLF	lung
10	chr11:19381600-19387600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:19381800-19385200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:19381800-19385200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:19381800-19385400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:19381800-19385600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:19381800-19386600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:19381800-19386800	Weak transcription	GM12878-XiMat	blood
17	chr11:19382000-19385200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:19382000-19385200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:19382000-19385400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:19382000-19387200	Weak transcription	HSMM	muscle
21	chr11:19382000-19387800	Weak transcription	HSMMtube	muscle
22	chr11:19382200-19386800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:19382400-19387800	Weak transcription	Adipose Nuclei	Adipose
24	chr11:19382600-19391200	Weak transcription	Placenta	Placenta
25	chr11:19383000-19385400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:19383600-19387600	Weak transcription	Lung	lung

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