Variant report

Variant	rs45526034
Chromosome Location	chr11:73686601-73686602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73684220..73687035-chr11:73766877..73770022,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs35815449	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45508598	1.00[AMR][1000 genomes]
rs45520037	1.00[AMR][1000 genomes]
rs45535341	1.00[AMR][1000 genomes]
rs45541040	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45565136	1.00[AMR][1000 genomes]
rs45567343	1.00[AMR][1000 genomes]
rs45569936	0.91[AFR][1000 genomes]
rs45583331	1.00[AMR][1000 genomes]
rs45600039	1.00[AMR][1000 genomes]
rs45626332	1.00[AMR][1000 genomes]
rs60141953	1.00[AMR][1000 genomes]
rs7101416	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	esv1827060	chr11:73670645-73694754	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv520299	chr11:73684294-73694754	Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73672800-73693200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:73675400-73692600	Weak transcription	Psoas Muscle	Psoas
3	chr11:73676000-73687400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:73676200-73687600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:73676400-73693200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:73676600-73691000	Weak transcription	Fetal Heart	heart
7	chr11:73680000-73686800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:73682600-73689200	Genic enhancers	Primary B cells from cord blood	blood
9	chr11:73683200-73689800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:73683200-73690800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:73683400-73689800	Genic enhancers	Thymus	Thymus
12	chr11:73683600-73688200	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:73683800-73687600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:73684000-73690800	Genic enhancers	Primary B cells from peripheral blood	blood
15	chr11:73684000-73691000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:73684000-73691000	Weak transcription	HUVEC	blood vessel
17	chr11:73684200-73690000	Genic enhancers	Fetal Thymus	thymus
18	chr11:73684200-73691000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:73684400-73687400	Weak transcription	Right Ventricle	heart
20	chr11:73684400-73689600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:73684400-73690400	Strong transcription	Fetal Intestine Small	intestine
22	chr11:73684400-73690600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:73684400-73691200	Strong transcription	Fetal Stomach	stomach
24	chr11:73684600-73690800	Genic enhancers	Primary monocytes fromperipheralblood	blood
25	chr11:73684800-73692600	Weak transcription	Right Atrium	heart
26	chr11:73685000-73686800	Genic enhancers	Spleen	Spleen
27	chr11:73685000-73687200	Weak transcription	HSMM	muscle
28	chr11:73685000-73688200	Genic enhancers	Fetal Muscle Trunk	muscle
29	chr11:73685000-73688400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr11:73685000-73689800	Genic enhancers	GM12878-XiMat	blood
31	chr11:73685000-73690200	Strong transcription	Brain Hippocampus Middle	brain
32	chr11:73685000-73690800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:73685000-73691000	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr11:73685000-73691000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:73685000-73691200	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr11:73685000-73691200	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:73685000-73691400	Genic enhancers	Fetal Muscle Leg	muscle
38	chr11:73685000-73691600	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:73685000-73693000	Weak transcription	NHDF-Ad	bronchial
40	chr11:73685200-73686800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr11:73685200-73689200	Weak transcription	Fetal Kidney	kidney
42	chr11:73685200-73689400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:73685200-73689600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr11:73685200-73689800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:73685200-73690000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
46	chr11:73685200-73690200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:73685200-73691000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:73685200-73691000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:73685200-73692200	Weak transcription	Small Intestine	intestine
50	chr11:73685400-73687400	Genic enhancers	Primary T helper cells fromperipheralblood	blood

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