Variant report

Variant	rs45527937
Chromosome Location	chr13:67801532-67801533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17521186	1.00[AFR][1000 genomes]
rs17592867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67795400-67805600	Active TSS	Brain Substantia Nigra	brain
2	chr13:67796200-67801800	Weak transcription	Psoas Muscle	Psoas
3	chr13:67796200-67803000	Weak transcription	Gastric	stomach
4	chr13:67796200-67806000	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr13:67796200-67806200	Active TSS	Brain Angular Gyrus	brain
6	chr13:67797200-67806000	Active TSS	Right Ventricle	heart
7	chr13:67797600-67806200	Active TSS	Fetal Kidney	kidney
8	chr13:67798600-67801600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:67798600-67801600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr13:67798600-67801600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr13:67798600-67802200	Weak transcription	Thymus	Thymus
12	chr13:67798600-67802200	Weak transcription	NH-A	brain
13	chr13:67798600-67802400	Weak transcription	HSMMtube	muscle
14	chr13:67798600-67802400	Weak transcription	NHDF-Ad	bronchial
15	chr13:67798600-67802600	Weak transcription	HUVEC	blood vessel
16	chr13:67798600-67802600	Weak transcription	Osteobl	bone
17	chr13:67798600-67802800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr13:67798600-67803000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr13:67798600-67803200	Weak transcription	K562	blood
20	chr13:67798800-67801800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr13:67798800-67802200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr13:67798800-67802200	Enhancers	Adipose Nuclei	Adipose
23	chr13:67798800-67802400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr13:67798800-67802600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr13:67798800-67803000	Weak transcription	Colon Smooth Muscle	Colon
26	chr13:67799400-67801600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr13:67799400-67801600	Genic enhancers	Primary B cells from cord blood	blood
28	chr13:67799400-67802000	Strong transcription	Fetal Muscle Leg	muscle
29	chr13:67799400-67802600	Transcr. at gene 5' and 3'	HSMM	muscle
30	chr13:67799600-67802400	Transcr. at gene 5' and 3'	A549	lung
31	chr13:67799600-67802800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr13:67799800-67805800	Active TSS	Brain Anterior Caudate	brain
33	chr13:67799800-67805800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr13:67800200-67803600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr13:67800200-67805600	Active TSS	Fetal Brain Female	brain
36	chr13:67800200-67806000	Active TSS	Left Ventricle	heart
37	chr13:67800400-67806000	Active TSS	Brain Hippocampus Middle	brain
38	chr13:67800600-67801600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr13:67800600-67802400	Enhancers	Fetal Heart	heart
40	chr13:67800600-67802400	Weak transcription	Fetal Stomach	stomach
41	chr13:67800600-67803000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr13:67800600-67803800	Active TSS	Stomach Smooth Muscle	stomach
43	chr13:67800800-67801800	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr13:67800800-67802200	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr13:67800800-67804200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr13:67800800-67806600	Active TSS	Brain Cingulate Gyrus	brain
47	chr13:67801000-67801800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr13:67801000-67802000	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr13:67801000-67802400	Enhancers	Dnd41	blood
50	chr13:67801000-67802600	Enhancers	Skeletal Muscle Female	skeletal muscle

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