Variant report

Variant	rs45530635
Chromosome Location	chr11:104868573-104868574
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1801319	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45504692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45569135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55634858	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55651735	0.88[EUR][1000 genomes]
rs55721600	0.88[EUR][1000 genomes]
rs55725142	0.88[EUR][1000 genomes]
rs55781362	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55932228	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56011093	0.88[EUR][1000 genomes]
rs56043157	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56349036	0.88[EUR][1000 genomes]
rs57760571	0.88[EUR][1000 genomes]
rs59367529	0.88[EUR][1000 genomes]
rs59580775	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59769457	0.88[EUR][1000 genomes]
rs7104993	0.88[EUR][1000 genomes]
rs7116603	0.88[EUR][1000 genomes]
rs7131099	0.88[EUR][1000 genomes]
rs72978960	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72978977	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72978981	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72978993	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72978997	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72978998	0.88[EUR][1000 genomes]
rs7941702	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv898355	chr11:104730322-104897843	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv1041081	chr11:104797775-104912458	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104863200-104871600	Weak transcription	Pancreas	Pancrea
2	chr11:104864000-104870000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:104864000-104877800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:104865600-104872800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:104867000-104870400	Weak transcription	HepG2	liver
6	chr11:104868000-104868600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:104868000-104868800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:104868200-104868600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:104868200-104868600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:104868200-104868600	Active TSS	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links