Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1045873	0.90[ASW][hapmap];0.84[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10828713	1.00[YRI][hapmap]
rs10828716	1.00[YRI][hapmap]
rs11014268	1.00[YRI][hapmap]
rs11014271	1.00[YRI][hapmap]
rs1112633	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12572362	1.00[YRI][hapmap]
rs1314337	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1575863	0.87[EUR][1000 genomes]
rs2104489	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2152433	1.00[LWK][hapmap]
rs2478088	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2484645	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2484648	0.90[ASW][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs4747503	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4748985	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4748987	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4748988	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9418456	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9418459	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817285	chr10:25117363-25120376	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
2	esv1823501	chr10:25117363-25120376	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
3	esv1817326	chr10:25117363-25138323	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25111800-25140000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:25112200-25123400	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:25114600-25126400	Weak transcription	Fetal Lung	lung
4	chr10:25115400-25135600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:25115800-25126000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:25117400-25120800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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