Variant report

Variant	rs4553436
Chromosome Location	chr12:118063914-118063915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10444499	0.80[EUR][1000 genomes]
rs1400593	0.80[EUR][1000 genomes]
rs1517196	0.80[EUR][1000 genomes]
rs1517201	0.80[EUR][1000 genomes]
rs1517204	0.80[EUR][1000 genomes]
rs1850403	0.80[EUR][1000 genomes]
rs4767579	0.84[ASN][1000 genomes]
rs4767580	0.80[EUR][1000 genomes]
rs4767582	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4767586	0.87[EUR][1000 genomes]
rs4767587	0.80[EUR][1000 genomes]
rs6490137	0.80[EUR][1000 genomes]
rs6490139	0.80[EUR][1000 genomes]
rs7957425	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118061000-118075000	Weak transcription	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links