Variant report

Variant	rs4553581
Chromosome Location	chr15:74194348-74194349
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11634339	0.94[ASN][1000 genomes]
rs11637990	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4886467	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56796873	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74188800-74204000	Weak transcription	Right Atrium	heart
2	chr15:74190000-74203400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:74190600-74194800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:74191600-74194600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:74191800-74194400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:74191800-74203600	Weak transcription	Primary T cells from cord blood	blood
7	chr15:74192200-74203400	Weak transcription	Aorta	Aorta
8	chr15:74192600-74196800	Weak transcription	Fetal Brain Male	brain
9	chr15:74192600-74207400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:74192600-74214000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:74193000-74194800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:74193000-74198800	Weak transcription	HSMM	muscle
13	chr15:74193200-74198600	Weak transcription	HSMMtube	muscle
14	chr15:74193400-74194800	Weak transcription	NHDF-Ad	bronchial
15	chr15:74193400-74195000	Weak transcription	Brain Germinal Matrix	brain
16	chr15:74193400-74200600	Weak transcription	Fetal Brain Female	brain
17	chr15:74193800-74195000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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