Variant report

Variant	rs45537235
Chromosome Location	chr15:29991431-29991432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:29991075..29993344-chr9:120138075..120141148,4	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11632546	0.83[ASN][1000 genomes]
rs11633069	0.83[ASN][1000 genomes]
rs11634148	0.81[EUR][1000 genomes]
rs11634700	0.83[ASN][1000 genomes]
rs11637683	0.83[ASN][1000 genomes]
rs11638797	0.83[ASN][1000 genomes]
rs12901062	0.83[ASN][1000 genomes]
rs16955758	0.83[ASN][1000 genomes]
rs1719031	0.83[ASN][1000 genomes]
rs1851520	0.83[ASN][1000 genomes]
rs260526	0.83[ASN][1000 genomes]
rs41280056	0.83[ASN][1000 genomes]
rs45449102	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45474401	0.83[ASN][1000 genomes]
rs45478093	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45505092	0.83[ASN][1000 genomes]
rs45583033	0.83[ASN][1000 genomes]
rs55845402	0.83[ASN][1000 genomes]
rs56307541	0.83[ASN][1000 genomes]
rs72719043	1.00[EUR][1000 genomes]
rs72719046	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72719047	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72719058	0.83[ASN][1000 genomes]
rs72719067	0.83[ASN][1000 genomes]
rs72719069	0.83[ASN][1000 genomes]
rs72719076	0.83[ASN][1000 genomes]
rs785444	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv903747	chr15:29361126-30008977	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv832944	chr15:29861062-30082057	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv832945	chr15:29932599-30123721	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv974492	chr15:29981646-29991999	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29969200-29992000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:29977800-29996200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:29979800-29993000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:29980800-29996400	Weak transcription	Colonic Mucosa	Colon
5	chr15:29981000-29994400	Weak transcription	Fetal Intestine Small	intestine
6	chr15:29981200-29993000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr15:29981400-29991800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:29981400-29994800	Weak transcription	K562	blood
9	chr15:29981400-29996400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:29982000-29992000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:29983600-29996200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:29983600-29997400	Weak transcription	Stomach Mucosa	stomach
13	chr15:29984000-29995400	Weak transcription	Gastric	stomach
14	chr15:29985600-29996200	Weak transcription	Pancreas	Pancrea
15	chr15:29986400-29996000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:29987000-29999400	Weak transcription	Brain Germinal Matrix	brain
17	chr15:29987200-29994600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:29988000-29992000	Weak transcription	Fetal Lung	lung
19	chr15:29988000-29996200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:29988200-29991800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:29988200-29992200	Weak transcription	Hela-S3	cervix
22	chr15:29988200-29993000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:29988600-29996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:29988800-29992000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr15:29988800-29997000	Weak transcription	Fetal Heart	heart
26	chr15:29988800-29999400	Weak transcription	Fetal Brain Male	brain
27	chr15:29989000-29993000	Weak transcription	Colon Smooth Muscle	Colon
28	chr15:29989000-30014800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr15:29989200-29995000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:29989200-29999200	Weak transcription	Spleen	Spleen
31	chr15:29989400-29995200	Strong transcription	HSMMtube	muscle
32	chr15:29989600-29991800	Enhancers	HUVEC	blood vessel
33	chr15:29989600-29992600	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr15:29989600-29997000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:29989600-30002400	Strong transcription	Fetal Muscle Leg	muscle
36	chr15:29989600-30013400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:29989600-30021200	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr15:29989600-30027200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:29989800-29991800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:29989800-29992400	Strong transcription	Brain Substantia Nigra	brain
41	chr15:29989800-29993200	Weak transcription	Ovary	ovary
42	chr15:29989800-29993400	Strong transcription	Fetal Kidney	kidney
43	chr15:29989800-29997800	Strong transcription	Brain Hippocampus Middle	brain
44	chr15:29989800-30000600	Strong transcription	Adipose Nuclei	Adipose
45	chr15:29990000-29991600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:29990000-30014200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:29990000-30016600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr15:29990200-29993400	Strong transcription	Right Ventricle	heart
49	chr15:29990200-29998000	Strong transcription	NHEK	skin
50	chr15:29990200-30000600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links