Variant report

Variant	rs4553871
Chromosome Location	chr2:134465646-134465647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:134463568..134466020-chr2:134468723..134471299,2	K562	blood:
2	chr2:134463917..134465687-chr2:134466589..134468202,2	K562	blood:
3	chr2:134451976..134454903-chr2:134463867..134466183,2	MCF-7	breast:
4	chr2:134464016..134466489-chr2:134473562..134476020,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1110673	0.81[ASN][1000 genomes]
rs12472557	0.81[ASN][1000 genomes]
rs12474261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348838	0.83[ASN][1000 genomes]
rs1901436	0.83[AMR][1000 genomes]
rs1901437	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs1901439	0.82[AMR][1000 genomes]
rs1901444	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1993135	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2321203	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2321298	0.85[ASN][1000 genomes]
rs2321301	0.81[ASN][1000 genomes]
rs3936142	0.95[ASN][1000 genomes]
rs4270397	0.90[ASN][1000 genomes]
rs4343520	0.90[ASN][1000 genomes]
rs4467329	0.95[ASN][1000 genomes]
rs4505578	0.80[ASN][1000 genomes]
rs4547575	0.95[ASN][1000 genomes]
rs4549152	0.91[ASN][1000 genomes]
rs4558640	0.95[ASN][1000 genomes]
rs4560170	0.95[ASN][1000 genomes]
rs6414015	0.83[ASN][1000 genomes]
rs6430443	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6430446	0.94[ASN][1000 genomes]
rs6430447	0.92[ASN][1000 genomes]
rs6715016	0.80[ASN][1000 genomes]
rs6726492	0.90[ASN][1000 genomes]
rs6738353	0.83[ASN][1000 genomes]
rs6743076	0.92[ASN][1000 genomes]
rs6752406	0.92[ASN][1000 genomes]
rs749825	0.81[ASN][1000 genomes]
rs7558993	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7580128	0.88[ASN][1000 genomes]
rs7586665	0.81[ASN][1000 genomes]
rs7595524	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7605721	0.89[ASN][1000 genomes]
rs9283451	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134463600-134466800	Weak transcription	Brain Angular Gyrus	brain

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