Variant report

Variant	rs45550034
Chromosome Location	chr10:97024302-97024303
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97024055..97024569-chr10:97033125..97033753,2	MCF-7	breast:
2	chr10:97023957..97026874-chr10:97030558..97032855,2	MCF-7	breast:
3	chr10:97022981..97025591-chr10:97038019..97040228,2	MCF-7	breast:
4	chr10:97023146..97026051-chr10:97049239..97052357,4	MCF-7	breast:
5	chr10:97023872..97028051-chr10:97048144..97051430,5	K562	blood:
6	chr10:97023137..97024649-chr10:97048787..97050553,2	MCF-7	breast:
7	chr10:97011474..97014381-chr10:97024033..97026286,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1049814	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1049921	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10882573	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188231	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188234	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11188247	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12357280	0.83[EUR][1000 genomes]
rs17452807	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7910217	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96998400-97030200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:97000400-97024400	Weak transcription	Fetal Kidney	kidney
3	chr10:97007000-97026400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:97009200-97028200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:97016400-97026200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:97016800-97036000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:97017200-97024400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:97018800-97030000	Weak transcription	Thymus	Thymus
9	chr10:97019200-97024800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:97019400-97026400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:97019600-97024800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:97020000-97026600	Genic enhancers	Fetal Intestine Large	intestine
13	chr10:97020200-97024600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
14	chr10:97020200-97025000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:97020200-97026600	Genic enhancers	Fetal Intestine Small	intestine
16	chr10:97020200-97026600	Enhancers	Right Atrium	heart
17	chr10:97020400-97024400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:97020400-97027000	Genic enhancers	HepG2	liver
19	chr10:97020800-97024400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:97021000-97026200	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:97021000-97026600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:97021000-97034400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:97021200-97025200	Strong transcription	GM12878-XiMat	blood
24	chr10:97021200-97025400	Weak transcription	Fetal Lung	lung
25	chr10:97021200-97026000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:97021200-97026200	Weak transcription	HUVEC	blood vessel
27	chr10:97021200-97026600	Genic enhancers	NHEK	skin
28	chr10:97021400-97024400	Strong transcription	Fetal Stomach	stomach
29	chr10:97021400-97025800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:97021400-97026000	Weak transcription	NH-A	brain
31	chr10:97021400-97026200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:97021400-97026200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr10:97021400-97036400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr10:97021600-97024400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:97021600-97024600	Strong transcription	Colonic Mucosa	Colon
36	chr10:97021600-97027800	Weak transcription	HSMM	muscle
37	chr10:97021800-97024400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:97021800-97025600	Strong transcription	Liver	Liver
39	chr10:97022000-97027400	Genic enhancers	Primary B cells from peripheral blood	blood
40	chr10:97022400-97024400	Strong transcription	Gastric	stomach
41	chr10:97022400-97024600	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr10:97022600-97024400	Strong transcription	Spleen	Spleen
43	chr10:97022800-97024800	Genic enhancers	Adipose Nuclei	Adipose
44	chr10:97023000-97024400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:97023000-97026400	Genic enhancers	Placenta	Placenta
46	chr10:97023000-97026800	Genic enhancers	Sigmoid Colon	Sigmoid Colon
47	chr10:97023200-97024800	Strong transcription	K562	blood
48	chr10:97023200-97025000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:97023200-97025000	Strong transcription	NHDF-Ad	bronchial
50	chr10:97023200-97028200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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