Variant report

Variant	rs4555040
Chromosome Location	chr13:53881665-53881666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1322949	0.95[CHB][hapmap]
rs1322951	0.95[CHB][hapmap]
rs1923771	0.95[CHB][hapmap]
rs4525388	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4584720	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs927518	0.87[CHB][hapmap]
rs9316609	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9527057	0.91[CHB][hapmap]
rs9527060	0.99[ASN][1000 genomes]
rs9527062	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9536378	0.95[CHB][hapmap]
rs9536389	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53881400-53881800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:53881600-53881800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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