Variant report

Variant	rs45560534
Chromosome Location	chr6:144258881-144258882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12203573	1.00[ASN][1000 genomes]
rs12209142	1.00[ASN][1000 genomes]
rs12214478	1.00[ASN][1000 genomes]
rs13217623	1.00[ASN][1000 genomes]
rs35138931	1.00[ASN][1000 genomes]
rs35963315	1.00[ASN][1000 genomes]
rs71564452	1.00[ASN][1000 genomes]
rs73579886	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144250600-144267800	Weak transcription	Fetal Brain Male	brain
2	chr6:144253200-144272600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:144255200-144262600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:144255800-144262600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:144256600-144262400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:144256600-144262600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:144256600-144284400	Weak transcription	Aorta	Aorta
8	chr6:144257600-144259200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:144257600-144259400	Enhancers	Fetal Stomach	stomach
10	chr6:144257600-144259600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:144257600-144259600	Enhancers	Fetal Lung	lung
12	chr6:144257600-144260600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:144257600-144260600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:144257800-144259200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:144257800-144259400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:144257800-144259400	Enhancers	HepG2	liver
17	chr6:144258000-144259000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:144258000-144259200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr6:144258200-144259200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:144258200-144259600	Enhancers	Fetal Muscle Leg	muscle
21	chr6:144258200-144259800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:144258200-144261400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:144258400-144259200	Enhancers	Fetal Intestine Large	intestine
24	chr6:144258400-144263000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:144258400-144288000	Weak transcription	Primary T cells from cord blood	blood
26	chr6:144258600-144259000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:144258600-144259600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:144258600-144267400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:144258800-144259000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
30	chr6:144258800-144259000	Enhancers	Small Intestine	intestine
31	chr6:144258800-144259200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:144258800-144259200	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr6:144258800-144259200	Enhancers	Fetal Kidney	kidney

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