The 2.0 version of rSNPBase

Variant report

Variant rs45567036
Chromosome Location chr5:40690409-40690410
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40680800-40690800 Transcr. at gene 5' and 3' Dnd41 blood
2 chr5:40682400-40691400 Weak transcription Spleen Spleen
3 chr5:40682800-40691400 Weak transcription Lung lung
4 chr5:40683000-40691600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr5:40683000-40691600 Weak transcription Esophagus oesophagus
6 chr5:40683000-40692000 Weak transcription Gastric stomach
7 chr5:40683800-40691600 Weak transcription Fetal Muscle Trunk muscle
8 chr5:40684000-40700600 Weak transcription Left Ventricle heart
9 chr5:40684600-40691600 Weak transcription Fetal Stomach stomach
10 chr5:40684600-40700400 Weak transcription Right Ventricle heart
11 chr5:40685400-40691800 Weak transcription Fetal Muscle Leg muscle
12 chr5:40685400-40692000 Weak transcription Aorta Aorta
13 chr5:40685600-40690800 Enhancers Primary T killer naive cells fromperipheralblood blood
14 chr5:40685800-40691600 Weak transcription Colonic Mucosa Colon
15 chr5:40686400-40690600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr5:40686800-40690800 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
17 chr5:40686800-40692000 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr5:40687600-40690600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr5:40687600-40690600 Enhancers HMEC breast
20 chr5:40687800-40690600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr5:40687800-40691800 Weak transcription Small Intestine intestine
22 chr5:40688000-40691600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
23 chr5:40688200-40690600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr5:40688200-40691000 Enhancers Primary T killer memory cells from peripheral blood blood
25 chr5:40688200-40693800 Genic enhancers Primary T helper cells fromperipheralblood blood
26 chr5:40688400-40696400 Weak transcription Liver Liver
27 chr5:40688400-40700400 Weak transcription Stomach Mucosa stomach
28 chr5:40688600-40690600 Enhancers NHLF lung
29 chr5:40688600-40690800 Genic enhancers Rectal Mucosa Donor 31 rectum
30 chr5:40688600-40690800 Enhancers NHDF-Ad bronchial
31 chr5:40688600-40691000 Enhancers Primary T helper naive cells fromperipheralblood blood
32 chr5:40688800-40690800 Enhancers A549 lung
33 chr5:40688800-40691200 Weak transcription Primary neutrophils fromperipheralblood blood
34 chr5:40688800-40691400 Weak transcription Primary B cells from peripheral blood blood
35 chr5:40688800-40691600 Weak transcription Rectal Smooth Muscle rectum
36 chr5:40688800-40691800 Weak transcription Fetal Intestine Large intestine
37 chr5:40688800-40691800 Weak transcription Thymus Thymus
38 chr5:40688800-40692000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr5:40688800-40692800 Genic enhancers Primary T cells fromperipheralblood blood
40 chr5:40688800-40694600 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr5:40688800-40696800 Weak transcription Fetal Lung lung
42 chr5:40688800-40697000 Strong transcription Fetal Thymus thymus
43 chr5:40688800-40718600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr5:40689000-40691200 Genic enhancers Primary T cells from cord blood blood
45 chr5:40689000-40691400 Weak transcription Stomach Smooth Muscle stomach
46 chr5:40689000-40691800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr5:40689000-40692000 Weak transcription Primary B cells from cord blood blood
48 chr5:40689200-40690600 Genic enhancers Primary T cells effector/memory enriched fromperipheralblood blood
49 chr5:40689200-40691000 Enhancers Muscle Satellite Cultured Cells --
50 chr5:40689200-40691200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015