Variant report

Variant	rs4558343
Chromosome Location	chr14:80345698-80345699
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10135705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10141936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10220538	0.81[CEU][hapmap];1.00[GIH][hapmap];0.81[EUR][1000 genomes]
rs1022434	0.90[GIH][hapmap]
rs12881175	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2064005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2205221	0.90[GIH][hapmap]
rs2223035	0.88[GIH][hapmap]
rs2371105	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7142797	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8019381	0.90[GIH][hapmap]
rs8022661	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs993920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80344600-80345800	Enhancers	Brain Germinal Matrix	brain
2	chr14:80345000-80346200	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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