Variant report

Variant	rs45584839
Chromosome Location	chr11:45684900-45684901
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45672171..45675080-chr11:45682496..45685022,2	K562	blood:

Variant related genes	Relation type
ENSG00000255091	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs45538436	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv467870	chr11:45684557-45757401	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv554199	chr11:45684557-45757401	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45678400-45685200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:45679600-45685400	Enhancers	Ovary	ovary
3	chr11:45680000-45688000	Enhancers	Fetal Brain Male	brain
4	chr11:45680200-45686000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:45681600-45685600	Weak transcription	Right Atrium	heart
6	chr11:45682000-45686200	Flanking Active TSS	Fetal Brain Female	brain
7	chr11:45682400-45686600	Bivalent Enhancer	Fetal Lung	lung
8	chr11:45682800-45685800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
9	chr11:45682800-45685800	Bivalent Enhancer	Fetal Stomach	stomach
10	chr11:45682800-45685800	Enhancers	Lung	lung
11	chr11:45683000-45686200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:45683200-45685200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr11:45683400-45685600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:45683400-45685600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr11:45683400-45686000	Bivalent Enhancer	Placenta	Placenta
16	chr11:45683400-45686200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:45683600-45685800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
18	chr11:45683800-45685600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
19	chr11:45683800-45685800	Enhancers	A549	lung
20	chr11:45684000-45685200	Enhancers	HSMM	muscle
21	chr11:45684000-45685400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
22	chr11:45684000-45685600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:45684000-45685800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:45684200-45685000	Flanking Active TSS	Brain Anterior Caudate	brain
25	chr11:45684200-45685000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
26	chr11:45684200-45685000	Flanking Active TSS	NH-A	brain
27	chr11:45684200-45685000	Flanking Active TSS	Osteobl	bone
28	chr11:45684200-45685600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:45684200-45685600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:45684200-45685600	Flanking Active TSS	Brain Germinal Matrix	brain
31	chr11:45684200-45685800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:45684200-45685800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:45684200-45685800	Bivalent Enhancer	Fetal Intestine Small	intestine
34	chr11:45684200-45686200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:45684200-45686400	Flanking Active TSS	HUVEC	blood vessel
36	chr11:45684400-45685000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
37	chr11:45684400-45685400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
38	chr11:45684400-45685400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:45684400-45685400	Bivalent Enhancer	Fetal Kidney	kidney
40	chr11:45684400-45685600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
41	chr11:45684400-45685600	Active TSS	Brain Cingulate Gyrus	brain
42	chr11:45684400-45685600	Bivalent Enhancer	Brain Substantia Nigra	brain
43	chr11:45684400-45685600	Bivalent Enhancer	Fetal Intestine Large	intestine
44	chr11:45684400-45685600	Bivalent Enhancer	HSMMtube	muscle
45	chr11:45684400-45685600	Bivalent Enhancer	NHDF-Ad	bronchial
46	chr11:45684400-45686200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:45684400-45686200	Enhancers	Placenta Amnion	Placenta Amnion
48	chr11:45684400-45686200	Bivalent Enhancer	NHLF	lung
49	chr11:45684600-45685000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
50	chr11:45684600-45685000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links