Variant report

Variant	rs45590239
Chromosome Location	chr14:45376406-45376407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:45364906..45367989-chr14:45374169..45379484,7	MCF-7	breast:
2	chr14:45367880..45372547-chr14:45375215..45379814,5	MCF-7	breast:
3	chr14:45369504..45371018-chr14:45373879..45376825,2	K562	blood:
4	chr14:45374504..45378148-chr14:45430345..45433217,3	K562	blood:

Variant related genes	Relation type
ENSG00000198718	Chromatin interaction
ENSG00000179454	Chromatin interaction
ENSG00000258633	Chromatin interaction
ENSG00000179476	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11846891	1.00[EUR][1000 genomes]
rs11847071	1.00[EUR][1000 genomes]
rs11850713	0.84[EUR][1000 genomes]
rs59017481	1.00[EUR][1000 genomes]
rs59073313	0.84[EUR][1000 genomes]
rs73334137	1.00[EUR][1000 genomes]
rs73334178	1.00[EUR][1000 genomes]
rs73334919	1.00[EUR][1000 genomes]
rs73340630	0.84[EUR][1000 genomes]
rs73340634	0.84[EUR][1000 genomes]
rs73346308	1.00[EUR][1000 genomes]
rs73346324	1.00[EUR][1000 genomes]
rs73348059	1.00[EUR][1000 genomes]
rs73348082	1.00[EUR][1000 genomes]
rs73349815	0.84[EUR][1000 genomes]
rs73350005	1.00[EUR][1000 genomes]
rs73353671	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869289	chr14:44752382-45447415	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv901832	chr14:44847444-45415597	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv995092	chr14:44973489-45393462	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
7	nsv1053437	chr14:45232269-45424222	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv1795667	chr14:45361680-45721052	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	esv1794986	chr14:45368685-45650813	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45367400-45381200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:45367400-45381200	Weak transcription	Lung	lung
3	chr14:45367600-45376600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:45367600-45381400	Weak transcription	HSMM	muscle
5	chr14:45367800-45376800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:45367800-45378200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr14:45367800-45380000	Weak transcription	Fetal Kidney	kidney
8	chr14:45367800-45380800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:45368000-45376600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:45368000-45377000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr14:45368000-45377200	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:45368000-45377800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr14:45368000-45377800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:45368000-45378200	Weak transcription	Primary B cells from cord blood	blood
15	chr14:45368000-45378200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr14:45368000-45380000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:45368200-45376600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:45368200-45377000	Weak transcription	HUVEC	blood vessel
19	chr14:45368200-45377200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr14:45368200-45377200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr14:45368200-45377600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr14:45368200-45378000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr14:45368200-45378400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr14:45368200-45380000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr14:45368200-45380200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:45368200-45381000	Weak transcription	Brain Anterior Caudate	brain
27	chr14:45368200-45381000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr14:45368200-45397400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr14:45368400-45378800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr14:45368400-45379000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr14:45368400-45380000	Weak transcription	HSMMtube	muscle
32	chr14:45368400-45380200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr14:45368400-45380800	Weak transcription	Brain Substantia Nigra	brain
34	chr14:45368400-45381000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:45368600-45376800	Weak transcription	Brain Hippocampus Middle	brain
36	chr14:45368600-45380600	Weak transcription	Fetal Lung	lung
37	chr14:45368600-45380600	Weak transcription	Fetal Stomach	stomach
38	chr14:45368800-45378200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr14:45368800-45381000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr14:45371600-45378600	Weak transcription	Brain Germinal Matrix	brain
41	chr14:45371600-45380600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr14:45371600-45381200	Weak transcription	Pancreas	Pancrea
43	chr14:45371800-45377200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:45371800-45380600	Weak transcription	Ovary	ovary
45	chr14:45371800-45381000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr14:45374000-45377600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr14:45374200-45376800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr14:45374400-45377600	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr14:45374400-45380400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr14:45374800-45376800	Weak transcription	Osteobl	bone

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