Variant report

Variant	rs4559258
Chromosome Location	chr1:215327749-215327750
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10958330	0.87[EUR][1000 genomes]
rs12546704	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12674487	0.81[ASN][1000 genomes]
rs12677394	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12678963	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12679089	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12679091	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13253271	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13255934	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13273927	0.81[ASN][1000 genomes]
rs13282392	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2033935	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2033936	0.85[EUR][1000 genomes]
rs2360281	0.90[EUR][1000 genomes]
rs2360282	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34319115	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34380205	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4873219	0.83[EUR][1000 genomes]
rs4873660	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4873662	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4873663	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4873665	0.85[EUR][1000 genomes]
rs55865782	0.82[EUR][1000 genomes]
rs66813456	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6987471	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71513587	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71513588	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs879285	0.87[EUR][1000 genomes]
rs9298479	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215314000-215333800	Weak transcription	NHDF-Ad	bronchial
2	chr1:215320000-215333600	Weak transcription	Osteobl	bone
3	chr1:215320000-215333800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:215323000-215333400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215325800-215330400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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