Variant report

Variant	rs455935
Chromosome Location	chr4:187603538-187603539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10002129	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11723473	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11724817	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs162181	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs327107	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs327109	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs327110	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs327113	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs455600	0.84[EUR][1000 genomes]
rs459796	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs461232	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4862723	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57663778	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6850371	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025088	chr4:187407683-187674585	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1025244	chr4:187419770-188284813	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1034212	chr4:187437895-188030805	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv537438	chr4:187437895-188030805	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv532745	chr4:187471692-188205443	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1022262	chr4:187475862-187848284	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1024705	chr4:187534005-187849091	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1026970	chr4:187537418-187913351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv596440	chr4:187538133-187848075	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv881509	chr4:187574398-187614434	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187573000-187605400	Weak transcription	Gastric	stomach
2	chr4:187583000-187614400	Weak transcription	Colonic Mucosa	Colon
3	chr4:187587600-187610200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:187588400-187604400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:187591200-187604000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:187591200-187607000	Weak transcription	Adipose Nuclei	Adipose
7	chr4:187591200-187614400	Weak transcription	Ovary	ovary
8	chr4:187591400-187603800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:187591400-187604400	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:187592200-187604000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:187592200-187605400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:187594000-187605800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:187594200-187603800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr4:187595800-187603800	Weak transcription	Left Ventricle	heart
15	chr4:187596000-187603800	Weak transcription	Fetal Intestine Large	intestine
16	chr4:187596000-187604000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:187597000-187603800	Weak transcription	Pancreas	Pancrea
18	chr4:187598200-187603800	Weak transcription	Fetal Stomach	stomach
19	chr4:187598200-187604000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:187598200-187604000	Weak transcription	Right Atrium	heart
21	chr4:187598200-187604000	Weak transcription	Right Ventricle	heart
22	chr4:187598200-187606000	Weak transcription	Small Intestine	intestine
23	chr4:187598200-187614400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr4:187598400-187609400	Weak transcription	Aorta	Aorta
25	chr4:187598600-187603800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:187598600-187603800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr4:187598600-187604400	Weak transcription	Fetal Lung	lung
28	chr4:187598600-187605400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:187598600-187605400	Weak transcription	Stomach Mucosa	stomach
30	chr4:187598600-187605800	Weak transcription	HSMMtube	muscle
31	chr4:187598600-187606000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr4:187598600-187606400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:187598800-187604000	Weak transcription	NHLF	lung
34	chr4:187598800-187604400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr4:187598800-187606000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr4:187599000-187603800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr4:187599000-187605800	Weak transcription	NH-A	brain
38	chr4:187599000-187606000	Weak transcription	NHDF-Ad	bronchial
39	chr4:187599200-187603800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:187599200-187604000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr4:187599200-187604000	Weak transcription	Fetal Heart	heart
42	chr4:187599200-187605600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:187599200-187606000	Weak transcription	Fetal Kidney	kidney
44	chr4:187599200-187606400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr4:187599400-187604000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr4:187599400-187604000	Weak transcription	Osteobl	bone
47	chr4:187599400-187604200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr4:187600000-187604800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr4:187600200-187617000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr4:187600400-187606000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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