Variant report

Variant	rs456022
Chromosome Location	chr20:15640240-15640241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs416842	0.83[EUR][1000 genomes]
rs417099	0.85[EUR][1000 genomes]
rs456544	0.81[AMR][1000 genomes]
rs460411	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs460771	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs460818	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs465374	0.91[EUR][1000 genomes]
rs465416	0.88[EUR][1000 genomes]
rs465525	0.91[EUR][1000 genomes]
rs465981	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6034249	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15634000-15641200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:15637200-15640800	Weak transcription	NHDF-Ad	bronchial
3	chr20:15638800-15640600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:15639600-15640800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr20:15639600-15641200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr20:15639600-15641200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr20:15639600-15641200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr20:15639800-15641000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr20:15640200-15641200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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