Variant report

Variant	rs4560651
Chromosome Location	chr6:55777854-55777855
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10498808	0.89[ASN][1000 genomes]
rs12198217	0.91[ASN][1000 genomes]
rs12199367	0.94[ASN][1000 genomes]
rs12209768	0.91[ASN][1000 genomes]
rs1447127	0.88[ASN][1000 genomes]
rs1447128	0.83[ASN][1000 genomes]
rs1562407	0.86[ASN][1000 genomes]
rs1562408	0.94[ASN][1000 genomes]
rs16887395	0.90[ASN][1000 genomes]
rs1838946	0.84[ASN][1000 genomes]
rs1868031	0.83[ASN][1000 genomes]
rs2028956	0.90[ASN][1000 genomes]
rs2044542	0.91[ASN][1000 genomes]
rs2044543	0.94[ASN][1000 genomes]
rs2056424	0.94[ASN][1000 genomes]
rs4574618	0.91[ASN][1000 genomes]
rs4599631	0.91[ASN][1000 genomes]
rs4715570	0.91[ASN][1000 genomes]
rs4715571	0.91[ASN][1000 genomes]
rs6459111	0.82[ASN][1000 genomes]
rs6459112	0.83[ASN][1000 genomes]
rs6459113	0.94[ASN][1000 genomes]
rs6459115	0.90[ASN][1000 genomes]
rs6459116	0.91[ASN][1000 genomes]
rs6459118	0.90[ASN][1000 genomes]
rs6925961	0.91[ASN][1000 genomes]
rs6932412	0.91[ASN][1000 genomes]
rs7752119	0.94[ASN][1000 genomes]
rs7755388	0.89[ASN][1000 genomes]
rs7755393	0.86[ASN][1000 genomes]
rs895641	0.90[ASN][1000 genomes]
rs895642	0.90[ASN][1000 genomes]
rs895643	0.90[ASN][1000 genomes]
rs9296809	0.91[ASN][1000 genomes]
rs9296810	0.90[ASN][1000 genomes]
rs9464303	0.94[ASN][1000 genomes]
rs9475467	0.94[ASN][1000 genomes]
rs9475469	0.94[ASN][1000 genomes]
rs9475471	0.91[ASN][1000 genomes]
rs9475472	0.90[ASN][1000 genomes]
rs9475473	0.90[ASN][1000 genomes]
rs9475477	0.90[ASN][1000 genomes]
rs9475480	0.91[ASN][1000 genomes]
rs9885708	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55777000-55778600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:55777800-55778400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:55777800-55778600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:55777800-55778600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:55777800-55778600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:55777800-55778600	Enhancers	Colon Smooth Muscle	Colon
7	chr6:55777800-55778800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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