Variant report

Variant	rs45620839
Chromosome Location	chr10:97004974-97004975
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97004316..97007342-chr10:97122955..97125277,3	MCF-7	breast:
2	chr10:97002945..97004630-chr10:97004800..97006467,2	K562	blood:
3	chr10:97003964..97007161-chr10:97008382..97011315,3	K562	blood:
4	chr10:97004348..97006901-chr10:97009361..97013623,3	MCF-7	breast:
5	chr10:97002381..97008883-chr10:97045266..97052392,13	MCF-7	breast:
6	chr10:97003038..97005827-chr10:97009513..97011595,2	K562	blood:
7	chr10:97004085..97006971-chr10:97024831..97027710,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs45619340	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96990800-97005200	Weak transcription	Psoas Muscle	Psoas
2	chr10:96991000-97006400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:96991000-97006400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:96991000-97006600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:96991000-97006600	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:96991000-97006600	Weak transcription	Right Atrium	heart
7	chr10:96991000-97007600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:96991000-97020400	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:96991000-97024000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:96991400-97019000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:96992000-97005000	Strong transcription	Duodenum Mucosa	Duodenum
12	chr10:96992000-97005800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:96992200-97009000	Strong transcription	Liver	Liver
14	chr10:96992400-97006200	Strong transcription	Placenta Amnion	Placenta Amnion
15	chr10:96996200-97006600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr10:96996400-97016000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr10:96996600-97007000	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr10:96996800-97005000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr10:96996800-97006600	Weak transcription	HUVEC	blood vessel
20	chr10:96996800-97009400	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:96997600-97006200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:96998000-97005800	Weak transcription	Hela-S3	cervix
23	chr10:96998000-97006400	Weak transcription	NHDF-Ad	bronchial
24	chr10:96998200-97005000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:96998200-97009400	Weak transcription	Small Intestine	intestine
26	chr10:96998400-97006200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:96998400-97006400	Weak transcription	HSMM	muscle
28	chr10:96998400-97006600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:96998400-97030200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:96999600-97008600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:96999800-97006600	Strong transcription	Adipose Nuclei	Adipose
32	chr10:96999800-97009000	Strong transcription	Primary B cells from cord blood	blood
33	chr10:97000000-97005600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:97000000-97006400	Strong transcription	NHEK	skin
35	chr10:97000000-97006600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
36	chr10:97000000-97006800	Strong transcription	Gastric	stomach
37	chr10:97000000-97009400	Strong transcription	Colonic Mucosa	Colon
38	chr10:97000200-97006600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:97000400-97006600	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr10:97000400-97006600	Strong transcription	HepG2	liver
41	chr10:97000400-97024400	Weak transcription	Fetal Kidney	kidney
42	chr10:97000600-97005200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:97001400-97005200	Weak transcription	Osteobl	bone
44	chr10:97001400-97006600	Weak transcription	HSMMtube	muscle
45	chr10:97001600-97005000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:97001600-97006400	Strong transcription	Left Ventricle	heart
47	chr10:97001600-97008800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr10:97001800-97005000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:97001800-97006000	Strong transcription	Right Ventricle	heart
50	chr10:97001800-97006200	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links