Variant report

Variant	rs4564157
Chromosome Location	chr1:161178155-161178156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161177155..161181241-chr1:161281992..161286131,5	K562	blood:
2	chr1:161176759..161178669-chr1:161280543..161282572,2	K562	blood:
3	chr1:161175566..161178282-chr1:161184177..161186435,3	K562	blood:

Variant related genes	Relation type
ENSG00000143252	Chromatin interaction
ENSG00000158869	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10797094	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11265564	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2501876	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3813622	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4233367	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4589131	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4656993	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512012	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161172800-161186800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:161172800-161193600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:161173000-161179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:161173400-161179400	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:161173400-161179600	Strong transcription	Fetal Intestine Large	intestine
6	chr1:161173400-161179800	Strong transcription	H1 Cell Line	embryonic stem cell
7	chr1:161173400-161179800	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:161173400-161179800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:161173400-161185200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:161173400-161185400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:161173600-161179200	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr1:161173600-161179800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:161173600-161184400	Strong transcription	Primary B cells from peripheral blood	blood
14	chr1:161173600-161184600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:161173600-161184800	Strong transcription	Fetal Muscle Trunk	muscle
16	chr1:161173600-161185000	Strong transcription	Fetal Muscle Leg	muscle
17	chr1:161173800-161179400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr1:161173800-161179400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:161173800-161179600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:161173800-161179600	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:161173800-161179600	Strong transcription	Fetal Thymus	thymus
22	chr1:161173800-161179800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr1:161173800-161179800	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr1:161173800-161185400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:161173800-161185400	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr1:161174000-161179800	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr1:161174200-161179000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:161174200-161179600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:161174200-161182000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr1:161174200-161184400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr1:161174200-161185200	Strong transcription	Brain Germinal Matrix	brain
32	chr1:161174200-161185400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:161174600-161185000	Strong transcription	Dnd41	blood
34	chr1:161175000-161185400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:161175000-161185800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:161175400-161179000	Weak transcription	Fetal Heart	heart
37	chr1:161175400-161179800	Strong transcription	Brain Cingulate Gyrus	brain
38	chr1:161175400-161184400	Strong transcription	NHEK	skin
39	chr1:161175400-161185800	Strong transcription	Fetal Stomach	stomach
40	chr1:161175600-161179000	Strong transcription	HepG2	liver
41	chr1:161175800-161179600	Strong transcription	Fetal Intestine Small	intestine
42	chr1:161175800-161184800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr1:161176000-161179000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr1:161176000-161185200	Strong transcription	Thymus	Thymus
45	chr1:161176000-161185400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr1:161176400-161184600	Strong transcription	Esophagus	oesophagus
47	chr1:161176400-161184800	Strong transcription	Adipose Nuclei	Adipose
48	chr1:161176400-161185800	Strong transcription	Placenta Amnion	Placenta Amnion
49	chr1:161176600-161178400	Enhancers	Ovary	ovary
50	chr1:161176600-161179200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links