Variant report

Variant	rs4564527
Chromosome Location	chr15:35434100-35434101
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2054254	1.00[AMR][1000 genomes]
rs28552390	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60088747	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389120	0.90[AFR][1000 genomes]
rs73389130	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1052721	chr15:35381487-35437841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv1050526	chr15:35418676-35437841	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35429000-35434800	Weak transcription	Ovary	ovary
2	chr15:35429600-35434800	Weak transcription	Left Ventricle	heart
3	chr15:35431200-35451800	Weak transcription	Aorta	Aorta
4	chr15:35432800-35434800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:35433000-35435200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr15:35433000-35435200	Enhancers	Fetal Stomach	stomach
7	chr15:35433000-35435400	Enhancers	Adipose Nuclei	Adipose
8	chr15:35433000-35435400	Enhancers	Fetal Lung	lung
9	chr15:35433000-35435600	Enhancers	Fetal Intestine Small	intestine
10	chr15:35433000-35435600	Enhancers	NHDF-Ad	bronchial
11	chr15:35433000-35435800	Enhancers	NHLF	lung
12	chr15:35433200-35435800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:35433400-35434400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:35433400-35434800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:35433400-35435000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:35433400-35435200	Enhancers	Osteobl	bone
17	chr15:35433400-35435400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr15:35433400-35435600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:35433400-35436000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:35433600-35434400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:35433600-35434600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:35433600-35434600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:35433600-35434800	Enhancers	HMEC	breast
24	chr15:35433600-35435400	Enhancers	Hela-S3	cervix
25	chr15:35433800-35434600	Enhancers	NH-A	brain
26	chr15:35433800-35434600	Enhancers	NHEK	skin
27	chr15:35433800-35435600	Enhancers	Fetal Intestine Large	intestine
28	chr15:35434000-35434600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:35434000-35435400	Enhancers	Stomach Smooth Muscle	stomach

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