Variant report

Variant	rs4568079
Chromosome Location	chr3:139832841-139832842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11921626	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs12630269	0.82[CHB][hapmap]
rs16849801	0.86[CHB][hapmap]
rs16849850	0.92[YRI][hapmap]
rs1878979	0.86[CHB][hapmap]
rs4491859	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4683797	0.80[CEU][hapmap]
rs7633131	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829738	chr3:139670836-139851945	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139822400-139834600	Weak transcription	HSMMtube	muscle
2	chr3:139828400-139835600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:139830200-139847400	Weak transcription	Right Atrium	heart
4	chr3:139831400-139837400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:139832400-139833400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:139832600-139834400	Enhancers	Ovary	ovary
7	chr3:139832800-139833600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:139832800-139834000	Enhancers	Brain Germinal Matrix	brain
9	chr3:139832800-139834000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr3:139832800-139834600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:139832800-139834800	Enhancers	Brain Substantia Nigra	brain
12	chr3:139832800-139836400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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