Variant report

Variant	rs4569599
Chromosome Location	chr3:80060876-80060877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11127671	0.82[EUR][1000 genomes]
rs1384761	0.82[EUR][1000 genomes]
rs1384762	0.81[EUR][1000 genomes]
rs1483440	0.82[EUR][1000 genomes]
rs1483442	0.82[EUR][1000 genomes]
rs1483448	0.81[EUR][1000 genomes]
rs6548667	0.82[EUR][1000 genomes]
rs6548668	0.82[EUR][1000 genomes]
rs6548670	0.82[EUR][1000 genomes]
rs6771640	0.82[EUR][1000 genomes]
rs6781474	0.81[EUR][1000 genomes]
rs7609707	0.82[EUR][1000 genomes]
rs988178	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv590740	chr3:79999534-80575042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv997786	chr3:80008898-80489031	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536598	chr3:80008898-80489031	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv877030	chr3:80013063-80444843	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1014658	chr3:80035786-80716259	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv536599	chr3:80035786-80716259	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv997720	chr3:80035786-80745662	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv1837825	chr3:80054997-80064020	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1797193	chr3:80057453-80064447	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
11	esv1821842	chr3:80057453-80064447	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv1794893	chr3:80060377-80064264	Weak transcription	n/a	n/a	inside rSNPs	n/a
13	nsv511205	chr3:80060377-80064264	Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv1815617	chr3:80060377-80064447	Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv1821801	chr3:80060377-80064447	Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv1823723	chr3:80060377-80064447	Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv1834587	chr3:80060377-80064447	Weak transcription	n/a	n/a	inside rSNPs	n/a
18	esv1838372	chr3:80060377-80064447	Weak transcription	n/a	n/a	inside rSNPs	n/a
19	esv3409124	chr3:80060612-80066310	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3461121	chr3:80060862-80066360	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80055200-80066600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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