Variant report

Variant	rs4570546
Chromosome Location	chr11:108775759-108775760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17108567	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
2	chr11:108763000-108797600	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:108767000-108777200	Weak transcription	Adipose Nuclei	Adipose
4	chr11:108767600-108777000	Weak transcription	HSMM	muscle
5	chr11:108768000-108776400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:108768000-108810600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:108768200-108776400	Weak transcription	NHEK	skin
8	chr11:108768200-108777000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:108768200-108779800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:108768600-108776200	Weak transcription	NH-A	brain
11	chr11:108769000-108791200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr11:108769200-108777000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:108769200-108777000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:108769200-108788600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr11:108769400-108780800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:108769800-108776400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:108769800-108776400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:108769800-108789600	Weak transcription	Primary B cells from cord blood	blood
19	chr11:108773200-108776400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:108773200-108776400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:108773200-108776400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:108773200-108777200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:108773400-108776200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:108773400-108776400	Weak transcription	A549	lung
25	chr11:108773400-108776800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:108774200-108777400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:108774600-108775800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:108775000-108775800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:108775000-108778200	Enhancers	Osteobl	bone
30	chr11:108775000-108794400	Weak transcription	Aorta	Aorta
31	chr11:108775200-108777400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:108775200-108778600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:108775400-108778200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr11:108775400-108779400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:108775600-108775800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:108775600-108775800	Enhancers	NHDF-Ad	bronchial
37	chr11:108775600-108777000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:108775600-108777200	Enhancers	Right Atrium	heart

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