Variant report

Variant	rs4572049
Chromosome Location	chr10:55102427-55102428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10762971	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12777753	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2384199	1.00[AMR][1000 genomes]
rs2384200	0.91[AMR][1000 genomes]
rs2384206	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4642985	1.00[EUR][1000 genomes]
rs6481011	1.00[AMR][1000 genomes]
rs7917553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7922434	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55096600-55104000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:55098400-55103600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:55098600-55103600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:55098800-55103600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr10:55098800-55103600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:55099400-55103800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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