Variant report

Variant	rs4572856
Chromosome Location	chr4:119676138-119676139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119670134..119671986-chr4:119675733..119678619,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17050428	1.00[EUR][1000 genomes]
rs59514079	1.00[EUR][1000 genomes]
rs59912399	1.00[EUR][1000 genomes]
rs72905487	1.00[EUR][1000 genomes]
rs72905494	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119607800-119693800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:119625800-119718000	Weak transcription	Hela-S3	cervix
3	chr4:119640800-119692600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr4:119641600-119679800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr4:119649200-119687600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:119649200-119693600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:119651800-119687400	Weak transcription	Thymus	Thymus
8	chr4:119654400-119687400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:119659600-119690400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:119660400-119688200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:119660400-119689800	Weak transcription	Brain Angular Gyrus	brain
12	chr4:119661800-119684600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:119662000-119677400	Weak transcription	Fetal Kidney	kidney
14	chr4:119662000-119687600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr4:119662000-119694400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr4:119665200-119687600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:119665600-119678000	Weak transcription	Esophagus	oesophagus
18	chr4:119665800-119687400	Weak transcription	Spleen	Spleen
19	chr4:119668000-119683600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:119668000-119689800	Weak transcription	Brain Germinal Matrix	brain
21	chr4:119668200-119678200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:119668200-119684000	Weak transcription	K562	blood
23	chr4:119668200-119690200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:119668400-119678400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr4:119669400-119677000	Weak transcription	Fetal Intestine Small	intestine
26	chr4:119669400-119679000	Strong transcription	GM12878-XiMat	blood
27	chr4:119669800-119676400	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr4:119671400-119682800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:119672000-119678200	Weak transcription	HMEC	breast
30	chr4:119672400-119676200	Genic enhancers	Osteobl	bone
31	chr4:119672400-119680400	Genic enhancers	NHDF-Ad	bronchial
32	chr4:119672800-119681200	Enhancers	Rectal Smooth Muscle	rectum
33	chr4:119672800-119681400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:119673000-119677600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr4:119673000-119681000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr4:119673000-119687400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr4:119673000-119687400	Weak transcription	Pancreas	Pancrea
38	chr4:119673200-119676400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:119673200-119677000	Weak transcription	Fetal Heart	heart
40	chr4:119673200-119677600	Weak transcription	Primary T cells from cord blood	blood
41	chr4:119673200-119677600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:119673200-119677600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:119673200-119677600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr4:119673200-119678200	Weak transcription	Lung	lung
45	chr4:119673200-119680600	Weak transcription	Primary B cells from cord blood	blood
46	chr4:119673200-119682200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr4:119673200-119687400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr4:119673400-119676400	Weak transcription	Fetal Lung	lung
49	chr4:119673400-119677400	Weak transcription	Left Ventricle	heart
50	chr4:119673400-119677600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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