Variant report

Variant	rs4573062
Chromosome Location	chr6:66260022-66260023
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1331205	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1411840	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1411850	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1411853	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3857535	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66608147	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7756463	0.94[EUR][1000 genomes]
rs9294642	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9342486	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9345648	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9345652	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9351510	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9354260	0.93[EUR][1000 genomes]
rs9363384	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9363398	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886012	chr6:65905998-66354809	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886029	chr6:66133281-66333105	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2763559	chr6:66201093-66360660	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv603442	chr6:66221979-66321544	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1027386	chr6:66232296-66291442	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1002545	chr6:66258736-66262125	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3349148	chr6:66259381-66262004	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv2576083	chr6:66259488-66262829	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3437244	chr6:66259521-66262286	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3485965	chr6:66259724-66262463	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv6318	chr6:66259753-66262296	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv2214118	chr6:66259848-66262224	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv511892	chr6:66259887-66262895	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3338531	chr6:66259914-66262109	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3485960	chr6:66259938-66262133	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3485958	chr6:66259939-66262134	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3485963	chr6:66259955-66262058	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv3472700	chr6:66259961-66262094	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3472701	chr6:66259976-66262044	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv3485961	chr6:66259977-66262079	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
21	esv3485966	chr6:66259985-66262067	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
22	esv3472698	chr6:66259987-66262090	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
23	esv3406970	chr6:66259997-66262049	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
24	esv3510	chr6:66260009-66262099	Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv3472699	chr6:66260011-66262031	Weak transcription	n/a	n/a	inside rSNPs	diseases
26	esv3485962	chr6:66260021-66262041	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:66259800-66267200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:66260000-66262200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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