Variant report

Variant	rs4573255
Chromosome Location	chr8:69143228-69143229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11987049	0.83[ASN][1000 genomes]
rs17450699	0.89[MEX][hapmap];0.83[ASN][1000 genomes]
rs17463773	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331644	chr8:68806705-69189171	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv890976	chr8:69100070-69155563	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69130000-69151800	Weak transcription	Lung	lung
2	chr8:69130800-69143600	Weak transcription	HUVEC	blood vessel
3	chr8:69131000-69151200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:69131200-69145000	Weak transcription	Fetal Stomach	stomach
5	chr8:69133000-69151800	Weak transcription	Left Ventricle	heart
6	chr8:69140000-69143800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:69141200-69143400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:69141200-69143400	Enhancers	Brain Substantia Nigra	brain
9	chr8:69141200-69144000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:69141400-69143800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:69141400-69143800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:69142000-69145200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr8:69142000-69146000	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:69142000-69151400	Weak transcription	Aorta	Aorta
15	chr8:69142400-69144200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:69142600-69153400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:69143000-69143400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:69143000-69143600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:69143000-69143800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:69143000-69144200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:69143000-69149400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr8:69143200-69144200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr8:69143200-69146600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:69143200-69155600	Weak transcription	Adipose Nuclei	Adipose

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