Variant report

Variant	rs4573755
Chromosome Location	chr12:87168271-87168272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10858469	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11104060	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11104061	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11104067	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11836240	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs12315500	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12822434	0.89[AFR][1000 genomes]
rs17040810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs2059774	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2195233	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2217235	0.86[CEU][hapmap]
rs2217237	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs4315154	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4365118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4842826	0.82[YRI][hapmap]
rs7138119	0.86[CEU][hapmap]
rs7314070	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[YRI][hapmap]
rs7975477	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs977781	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[YRI][hapmap]
rs983529	0.96[CEU][hapmap];0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899396	chr12:86863041-87276957	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv899399	chr12:86880442-87177972	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv916604	chr12:86966256-87275268	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1049580	chr12:86966497-87354132	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv899400	chr12:87055983-87194443	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv559692	chr12:87098055-87263693	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87163200-87168600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr12:87166800-87171000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:87168000-87168400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:87168000-87168400	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr12:87168200-87169600	Enhancers	HUES48 Cell Line	embryonic stem cell

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