Variant report

Variant	rs4573770
Chromosome Location	chr12:87825470-87825471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:87819379..87822423-chr12:87825316..87827871,3	MCF-7	breast:
2	chr12:87823587..87825538-chr12:87827654..87830409,3	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10735261	0.83[EUR][1000 genomes]
rs10735262	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10735264	0.83[EUR][1000 genomes]
rs10745444	0.83[EUR][1000 genomes]
rs10745448	0.83[EUR][1000 genomes]
rs10745449	0.83[EUR][1000 genomes]
rs10777043	0.83[EUR][1000 genomes]
rs10777048	0.83[EUR][1000 genomes]
rs10858598	0.86[AFR][1000 genomes]
rs10858599	0.81[EUR][1000 genomes]
rs11104470	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1353484	0.83[EUR][1000 genomes]
rs1353486	0.83[EUR][1000 genomes]
rs1353487	0.83[EUR][1000 genomes]
rs1353488	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1390604	0.83[EUR][1000 genomes]
rs1390605	0.83[EUR][1000 genomes]
rs1496320	0.83[EUR][1000 genomes]
rs1496321	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2047306	0.83[EUR][1000 genomes]
rs4258454	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4303307	0.83[EUR][1000 genomes]
rs4310691	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4319586	0.83[EUR][1000 genomes]
rs4372533	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4442619	0.83[EUR][1000 genomes]
rs4576908	0.83[EUR][1000 genomes]
rs4590963	0.83[EUR][1000 genomes]
rs4635161	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4842462	0.83[EUR][1000 genomes]
rs4842576	0.83[EUR][1000 genomes]
rs6538087	0.91[CEU][hapmap]
rs6538088	0.91[CEU][hapmap]
rs6538104	0.83[EUR][1000 genomes]
rs6538105	0.83[EUR][1000 genomes]
rs6538106	0.83[EUR][1000 genomes]
rs7311170	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7959041	0.83[EUR][1000 genomes]
rs7967687	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7969510	0.83[EUR][1000 genomes]
rs7969855	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430523	chr12:87757132-87865832	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv430525	chr12:87757132-87905532	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3329221	chr12:87785317-87833393	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv559701	chr12:87801947-87905878	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3350469	chr12:87802235-87844904	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87822800-87833000	Weak transcription	A549	lung
2	chr12:87824800-87831400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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