Variant report

Variant	rs4574581
Chromosome Location	chr5:89925895-89925896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:89924678..89927128-chr5:89929071..89931303,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10058765	0.81[ASN][1000 genomes]
rs10060427	0.81[ASN][1000 genomes]
rs10062714	0.81[ASN][1000 genomes]
rs10062924	0.81[ASN][1000 genomes]
rs10072105	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11741740	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12516985	0.81[ASN][1000 genomes]
rs1673379	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16868957	0.81[ASN][1000 genomes]
rs1700511	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2366773	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2366774	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2366777	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28550273	0.81[ASN][1000 genomes]
rs4379236	0.81[ASN][1000 genomes]
rs490812	0.83[ASN][1000 genomes]
rs491241	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4916681	0.81[ASN][1000 genomes]
rs4916682	0.84[ASN][1000 genomes]
rs4916813	0.84[ASN][1000 genomes]
rs4916814	0.84[ASN][1000 genomes]
rs498491	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs502596	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs617379	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs637442	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs645652	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6878917	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6883872	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6888355	0.88[EUR][1000 genomes]
rs688960	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6891275	0.81[EUR][1000 genomes]
rs6898209	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7726624	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7729703	0.80[ASN][1000 genomes]
rs9283788	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs963866	0.84[ASN][1000 genomes]
rs9790907	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv933668	chr5:89854253-89999672	Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv531965	chr5:89886550-90145002	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89909800-89926400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr5:89909800-89928800	Weak transcription	Fetal Brain Female	brain
3	chr5:89910000-89927000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:89910000-89928600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:89914200-89927000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:89914200-89928600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:89917000-89927000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:89917400-89926200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:89918000-89950600	Weak transcription	Pancreas	Pancrea
10	chr5:89919600-89936400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:89920800-89928800	Weak transcription	Brain Anterior Caudate	brain
12	chr5:89922800-89928600	Weak transcription	Brain Germinal Matrix	brain
13	chr5:89923600-89927000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:89924200-89928400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:89924400-89927800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:89925200-89927000	Weak transcription	K562	blood
17	chr5:89925200-89936400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:89925400-89928000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:89925400-89936200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr5:89925400-89938600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:89925600-89928000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:89925600-89931200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:89925800-89927200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:89925800-89928000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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