Variant report

Variant	rs4576324
Chromosome Location	chr7:15121823-15121824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs12112796	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12112806	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12112808	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878372	0.84[EUR][1000 genomes]
rs17168605	0.84[EUR][1000 genomes]
rs17168612	0.84[EUR][1000 genomes]
rs17168638	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17168640	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377598	0.84[EUR][1000 genomes]
rs2358161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4573145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4598156	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55901812	0.90[EUR][1000 genomes]
rs55919501	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56299502	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56776042	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57931388	0.84[EUR][1000 genomes]
rs66560200	0.84[EUR][1000 genomes]
rs66718721	0.84[EUR][1000 genomes]
rs66746212	0.84[EUR][1000 genomes]
rs66835180	0.84[EUR][1000 genomes]
rs67050865	0.84[EUR][1000 genomes]
rs67058017	0.84[EUR][1000 genomes]
rs67059105	0.84[EUR][1000 genomes]
rs67306396	0.84[EUR][1000 genomes]
rs67376120	0.84[EUR][1000 genomes]
rs67865027	0.84[EUR][1000 genomes]
rs720870	0.84[EUR][1000 genomes]
rs720871	0.84[EUR][1000 genomes]
rs720872	0.84[EUR][1000 genomes]
rs73063212	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063220	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063223	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063226	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063227	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063229	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063231	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063234	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063238	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063241	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73064853	0.84[EUR][1000 genomes]
rs73064861	0.84[EUR][1000 genomes]
rs73064875	0.84[EUR][1000 genomes]
rs73064881	0.84[EUR][1000 genomes]
rs73064882	0.84[EUR][1000 genomes]
rs73066726	0.90[EUR][1000 genomes]
rs73066737	0.90[EUR][1000 genomes]
rs73066747	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73066750	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73066752	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs758714	0.84[EUR][1000 genomes]
rs758715	0.84[EUR][1000 genomes]
rs758716	0.84[EUR][1000 genomes]
rs7793369	0.80[EUR][1000 genomes]
rs7793512	0.84[EUR][1000 genomes]
rs7809916	0.84[EUR][1000 genomes]
rs7810442	0.84[EUR][1000 genomes]
rs917795	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917797	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917799	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758104	chr7:14896877-15299786	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2759512	chr7:14896877-15299786	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1032569	chr7:14905287-15597069	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1021172	chr7:14944318-15548794	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv538743	chr7:14944318-15548794	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv517876	chr7:15010824-15198589	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv830910	chr7:15011028-15212309	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv887721	chr7:15025332-15163610	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2761127	chr7:15051210-15152813	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1029986	chr7:15051210-15152813	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv522499	chr7:15051754-15148454	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1018434	chr7:15054190-15144078	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv606287	chr7:15063085-15121951	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv2756799	chr7:15071860-15172274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv34790	chr7:15074560-15157160	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv606289	chr7:15074567-15152288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv1025895	chr7:15074567-15159694	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv606290	chr7:15078991-15156372	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv818486	chr7:15078991-15159483	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv464391	chr7:15087599-15121951	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv606291	chr7:15087599-15121951	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv887723	chr7:15087599-15124747	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv522976	chr7:15108184-15318473	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv8059	chr7:15119738-15122201	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15121000-15122200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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