Variant report

Variant	rs4576801
Chromosome Location	chr11:16777342-16777343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16766485..16768755-chr11:16775247..16777635,2	MCF-7	breast:
2	chr11:16759801..16761698-chr11:16777281..16779265,2	K562	blood:
3	chr11:16767679..16771451-chr11:16774137..16777840,3	K562	blood:

Variant related genes	Relation type
ENSG00000110696	Chromatin interaction
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61881964	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16761400-16783000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:16762200-16780200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:16763000-16780600	Strong transcription	Fetal Thymus	thymus
4	chr11:16763200-16780200	Strong transcription	Osteobl	bone
5	chr11:16763400-16780400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:16763600-16780400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:16764000-16781000	Strong transcription	Primary B cells from peripheral blood	blood
8	chr11:16764200-16778000	Strong transcription	Primary B cells from cord blood	blood
9	chr11:16764400-16777800	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr11:16764400-16780000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:16764400-16780400	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr11:16764600-16779600	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:16764600-16780200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:16764600-16780400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:16764600-16780400	Strong transcription	A549	lung
16	chr11:16764600-16781600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:16765000-16780200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr11:16765000-16780400	Strong transcription	Dnd41	blood
19	chr11:16765400-16780000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:16765400-16780400	Strong transcription	Duodenum Mucosa	Duodenum
21	chr11:16765600-16777800	Strong transcription	HMEC	breast
22	chr11:16765800-16778000	Strong transcription	HUVEC	blood vessel
23	chr11:16765800-16779600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:16765800-16779800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:16765800-16780200	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:16765800-16780400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:16765800-16780600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:16765800-16780600	Strong transcription	Placenta	Placenta
29	chr11:16766000-16778400	Strong transcription	Ovary	ovary
30	chr11:16766000-16779800	Strong transcription	Hela-S3	cervix
31	chr11:16766000-16780200	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:16766000-16780200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:16766000-16780800	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr11:16766000-16781000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:16766200-16778800	Strong transcription	Liver	Liver
36	chr11:16766200-16780200	Strong transcription	Primary hematopoietic stem cells	blood
37	chr11:16766200-16780600	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr11:16766200-16780600	Strong transcription	Fetal Intestine Large	intestine
39	chr11:16766400-16777800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:16766400-16778000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:16766400-16779800	Strong transcription	NH-A	brain
42	chr11:16766400-16780400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr11:16766600-16777600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:16766600-16778200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:16766600-16780800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:16766800-16777800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:16766800-16777800	Strong transcription	Fetal Brain Female	brain
48	chr11:16766800-16780800	Strong transcription	Fetal Muscle Leg	muscle
49	chr11:16767000-16780200	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr11:16767000-16780200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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