Variant report

Variant	rs4577073
Chromosome Location	chr16:83240753-83240754
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11642850	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11645255	1.00[ASN][1000 genomes]
rs12102654	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12932718	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12933683	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12934245	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959761	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16959765	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16959769	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959795	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959801	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959805	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959808	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28634608	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28758228	1.00[ASN][1000 genomes]
rs35549606	1.00[ASN][1000 genomes]
rs4313801	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4324115	1.00[ASN][1000 genomes]
rs4454960	1.00[ASN][1000 genomes]
rs4454961	1.00[ASN][1000 genomes]
rs4564551	1.00[ASN][1000 genomes]
rs4597305	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4782751	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4782752	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4782753	1.00[ASN][1000 genomes]
rs4782754	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4783332	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4783333	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4783334	1.00[ASN][1000 genomes]
rs4783335	1.00[ASN][1000 genomes]
rs4783337	0.89[ASN][1000 genomes]
rs55992624	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56121462	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199356	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7200869	0.81[EUR][1000 genomes]
rs73608404	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74031468	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74031469	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74031471	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74031472	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8045311	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8063708	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9319583	0.83[ASN][1000 genomes]
rs9928871	0.83[ASN][1000 genomes]
rs9972868	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833306	chr16:83113899-83298775	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv869185	chr16:83125002-83342105	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1062989	chr16:83138449-83271119	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1058227	chr16:83160315-83300357	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv907034	chr16:83193262-83323717	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1061195	chr16:83193262-83377916	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv949378	chr16:83240439-83307778	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:83217400-83285000	Weak transcription	Aorta	Aorta
2	chr16:83225600-83280600	Weak transcription	Psoas Muscle	Psoas
3	chr16:83228000-83245200	Weak transcription	Left Ventricle	heart
4	chr16:83233800-83251000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr16:83234200-83251000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:83234200-83251000	Weak transcription	NHEK	skin
7	chr16:83237000-83245400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr16:83239800-83241000	Enhancers	HSMM	muscle
9	chr16:83240000-83245600	Weak transcription	Right Ventricle	heart
10	chr16:83240200-83258200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:83240200-83266600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr16:83240400-83242000	Weak transcription	NH-A	brain
13	chr16:83240400-83243400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr16:83240400-83269200	Weak transcription	HMEC	breast
15	chr16:83240600-83261400	Weak transcription	HSMMtube	muscle

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