Variant report

Variant	rs4581870
Chromosome Location	chr2:172769907-172769908
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172747709..172751277-chr2:172768441..172772917,4	K562	blood:
2	chr2:172769606..172772915-chr2:172967149..172970199,3	K562	blood:
3	chr2:172764440..172768356-chr2:172769175..172774540,8	K562	blood:
4	chr2:172763759..172768235-chr2:172769175..172774540,7	K562	blood:
5	chr2:172769627..172771187-chr2:172785586..172788506,2	K562	blood:
6	chr2:172769627..172772363-chr2:172785996..172788506,2	K562	blood:
7	chr2:172767380..172770009-chr2:172775350..172777979,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11675404	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs11676438	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11695630	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs12987931	0.83[CHB][hapmap]
rs1965160	0.84[CHB][hapmap]
rs1996424	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs3770458	0.80[CEU][hapmap]
rs3770459	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs62182403	0.81[AMR][1000 genomes]
rs62182436	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62183766	0.84[AMR][1000 genomes]
rs62183769	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62183770	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6718013	0.85[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap]
rs6730085	0.82[JPT][hapmap]
rs6737308	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7584187	0.85[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834457	chr2:172564939-172770901	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv875410	chr2:172693780-172896587	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv875411	chr2:172693780-172942448	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536037	chr2:172745597-172780616	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172769800-172770200	Bivalent Enhancer	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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