Variant report

Variant	rs4584147
Chromosome Location	chr8:122142880-122142881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:122141215..122143524-chr8:122156555..122159190,3	MCF-7	breast:
2	chr8:122142074..122144546-chr8:122144570..122146838,3	MCF-7	breast:
3	chr8:122131048..122133501-chr8:122142190..122144429,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10956002	0.92[EUR][1000 genomes]
rs10956003	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10956004	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17201978	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17261452	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17262162	0.89[EUR][1000 genomes]
rs2019338	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28675872	0.90[EUR][1000 genomes]
rs4367550	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60715997	0.98[EUR][1000 genomes]
rs6984162	0.93[EUR][1000 genomes]
rs73320943	0.93[EUR][1000 genomes]
rs73320945	0.93[EUR][1000 genomes]
rs73707537	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122139400-122144000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:122140600-122143800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:122141000-122143400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:122141200-122143000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:122141200-122144000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:122141400-122143000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:122141400-122143600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr8:122141400-122143800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr8:122141400-122143800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:122141400-122143800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:122141400-122144400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr8:122141600-122143200	Enhancers	Primary hematopoietic stem cells	blood
13	chr8:122141600-122144200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr8:122141800-122143000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:122141800-122143200	Enhancers	HSMM	muscle
16	chr8:122142000-122143600	Enhancers	HSMMtube	muscle
17	chr8:122142000-122146800	Enhancers	Fetal Lung	lung
18	chr8:122142200-122143600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr8:122142400-122143000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:122142400-122143000	Enhancers	NH-A	brain
21	chr8:122142400-122143200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:122142400-122143400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:122142400-122143400	Weak transcription	NHLF	lung
24	chr8:122142400-122143600	Enhancers	Osteobl	bone
25	chr8:122142400-122143800	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr8:122142400-122144000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr8:122142600-122144200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:122142600-122144400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:122142800-122143000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:122142800-122143400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links