Variant report

Variant	rs4586381
Chromosome Location	chr15:74146938-74146939
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11637249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438959	0.90[ASN][1000 genomes]
rs12591598	0.90[ASN][1000 genomes]
rs1349642	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1349643	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1452385	0.81[ASN][1000 genomes]
rs1452387	0.81[ASN][1000 genomes]
rs28379895	0.81[ASN][1000 genomes]
rs28408164	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28608632	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4338750	0.81[ASN][1000 genomes]
rs4366671	0.81[ASN][1000 genomes]
rs4457949	0.81[ASN][1000 genomes]
rs4577028	0.88[ASN][1000 genomes]
rs4633670	0.81[ASN][1000 genomes]
rs4886693	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886695	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs994416	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74146600-74147000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr15:74146600-74147400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:74146600-74147400	Enhancers	Fetal Brain Male	brain
4	chr15:74146600-74147400	Enhancers	Right Atrium	heart
5	chr15:74146600-74147600	Enhancers	Left Ventricle	heart
6	chr15:74146800-74149000	Weak transcription	Right Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links