Variant report

Variant	rs4588146
Chromosome Location	chr2:181853151-181853152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181843873..181847676-chr2:181852580..181857298,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236153	Chromatin interaction
ENSG00000170035	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4289136	1.00[EUR][1000 genomes]
rs4343437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4427978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6433884	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027486	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875476	chr2:181767757-181854997	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181846400-181859200	Weak transcription	Esophagus	oesophagus
2	chr2:181846400-181868600	Weak transcription	Gastric	stomach
3	chr2:181846600-181872400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:181847000-181855000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr2:181847000-181856400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:181847000-181857600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:181847000-181858800	Weak transcription	Colonic Mucosa	Colon
8	chr2:181847000-181859200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:181847000-181862400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:181847000-181862800	Weak transcription	Placenta	Placenta
11	chr2:181847000-181870000	Weak transcription	Pancreas	Pancrea
12	chr2:181847000-181873200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:181847200-181858800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr2:181847400-181870000	Weak transcription	Right Ventricle	heart
15	chr2:181847600-181864200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr2:181847600-181868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr2:181847800-181854400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr2:181848800-181856200	Weak transcription	Psoas Muscle	Psoas
19	chr2:181848800-181856400	Weak transcription	Ovary	ovary
20	chr2:181849000-181856200	Weak transcription	Aorta	Aorta
21	chr2:181849000-181856200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr2:181849000-181862000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr2:181849000-181872800	Weak transcription	Fetal Intestine Large	intestine
24	chr2:181849200-181854600	Weak transcription	Adipose Nuclei	Adipose
25	chr2:181849200-181855800	Weak transcription	Primary B cells from cord blood	blood
26	chr2:181849200-181860000	Weak transcription	Fetal Intestine Small	intestine
27	chr2:181849400-181854400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:181849400-181854800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr2:181849400-181855200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr2:181849400-181880000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr2:181849600-181855400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr2:181849800-181854600	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr2:181849800-181855000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:181850000-181853800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr2:181850000-181854000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr2:181850000-181855200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr2:181850000-181856200	Weak transcription	Fetal Stomach	stomach
38	chr2:181850000-181873000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr2:181850200-181854800	Weak transcription	Fetal Muscle Leg	muscle
40	chr2:181850200-181854800	Weak transcription	HUVEC	blood vessel
41	chr2:181850400-181853200	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr2:181850400-181854600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr2:181850600-181854400	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr2:181850800-181853400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr2:181850800-181854200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr2:181850800-181855000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr2:181850800-181855400	Weak transcription	HMEC	breast
48	chr2:181850800-181857200	Weak transcription	Liver	Liver
49	chr2:181850800-181857200	Weak transcription	A549	lung
50	chr2:181850800-181869800	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links