The 2.0 version of rSNPBase

Variant report

Variant rs4589108
Chromosome Location chr1:114259625-114259626
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:114203200-114298600 Weak transcription Fetal Brain Male brain
2 chr1:114216200-114279800 Weak transcription Stomach Smooth Muscle stomach
3 chr1:114220400-114263800 Weak transcription Fetal Kidney kidney
4 chr1:114227000-114268200 Weak transcription NHLF lung
5 chr1:114228000-114287800 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr1:114236400-114300000 Weak transcription Small Intestine intestine
7 chr1:114238200-114264400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr1:114238400-114266800 Weak transcription NHEK skin
9 chr1:114239000-114260400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
10 chr1:114239200-114279800 Weak transcription Colon Smooth Muscle Colon
11 chr1:114240200-114260800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr1:114240200-114279400 Weak transcription Psoas Muscle Psoas
13 chr1:114242000-114300000 Weak transcription Rectal Smooth Muscle rectum
14 chr1:114242200-114260200 Weak transcription Esophagus oesophagus
15 chr1:114242200-114260800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:114242200-114260800 Weak transcription Fetal Lung lung
17 chr1:114242200-114260800 Weak transcription Ovary ovary
18 chr1:114242200-114261000 Weak transcription H9 Cell Line embryonic stem cell
19 chr1:114242200-114261200 Weak transcription Brain Hippocampus Middle brain
20 chr1:114242200-114261200 Weak transcription Skeletal Muscle Male skeletal muscle
21 chr1:114242800-114269800 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr1:114245400-114270800 Weak transcription Primary T helper cells fromperipheralblood blood
23 chr1:114245400-114275000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr1:114245600-114300600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr1:114245800-114261200 Weak transcription Primary T cells from cord blood blood
26 chr1:114246000-114259800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr1:114246000-114260200 Strong transcription Primary hematopoietic stem cells short term culture blood
28 chr1:114248800-114290200 Weak transcription HMEC breast
29 chr1:114250600-114261200 Weak transcription Brain Cingulate Gyrus brain
30 chr1:114251000-114260800 Weak transcription Brain Angular Gyrus brain
31 chr1:114251000-114291400 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr1:114251800-114261000 Weak transcription Pancreatic Islets Pancreatic Islet
33 chr1:114252800-114260800 Weak transcription Hela-S3 cervix
34 chr1:114253000-114261000 Weak transcription Placenta Placenta
35 chr1:114253000-114261000 Weak transcription HepG2 liver
36 chr1:114253000-114279400 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr1:114253000-114279600 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr1:114253200-114260200 Weak transcription H1 Cell Line embryonic stem cell
39 chr1:114253200-114260400 Weak transcription Fetal Brain Female brain
40 chr1:114253200-114261000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:114253200-114263400 Weak transcription Duodenum Mucosa Duodenum
42 chr1:114253200-114266800 Weak transcription HSMM muscle
43 chr1:114253400-114260600 Weak transcription Fetal Intestine Large intestine
44 chr1:114253400-114266800 Weak transcription Primary T cells fromperipheralblood blood
45 chr1:114254000-114272200 Weak transcription HSMMtube muscle
46 chr1:114254200-114261200 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr1:114254400-114260000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
48 chr1:114254600-114277000 Weak transcription Adipose Nuclei Adipose
49 chr1:114254800-114260600 Weak transcription iPS-18 Cell Line embryonic stem cell
50 chr1:114254800-114262600 Weak transcription Osteobl bone

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Last update: Aug 31, 2015